Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00347
         (572 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9FNV0 Cluster: Somatic embryogenesis related protein; ...    35   1.6  
UniRef50_Q42404 Cluster: U1 small nuclear ribonucleoprotein 70 k...    33   3.6  
UniRef50_Q9FHD6 Cluster: Arabidopsis thaliana genomic DNA, chrom...    33   4.8  

>UniRef50_Q9FNV0 Cluster: Somatic embryogenesis related protein;
           n=1; Dactylis glomerata|Rep: Somatic embryogenesis
           related protein - Dactylis glomerata (Orchard grass)
           (Cock's-foot grass)
          Length = 354

 Score = 34.7 bits (76), Expect = 1.6
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +2

Query: 14  GGRSRER-NFDYGGEPNRNRGRWRRTQETEA 103
           GGR R+R ++ YGG+    RG WR  +E EA
Sbjct: 324 GGRGRDRFDYQYGGKKQHARGCWRTNREMEA 354


>UniRef50_Q42404 Cluster: U1 small nuclear ribonucleoprotein 70 kDa;
           n=9; Magnoliophyta|Rep: U1 small nuclear
           ribonucleoprotein 70 kDa - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 427

 Score = 33.5 bits (73), Expect = 3.6
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 14  GGRSRERNFDYGGEPNRNRGRWRRTQ 91
           GGRSRER+ +Y GEP   RG +   Q
Sbjct: 365 GGRSRERDAEYRGEPEETRGYYEDDQ 390


>UniRef50_Q9FHD6 Cluster: Arabidopsis thaliana genomic DNA,
           chromosome 5, TAC clone:K1O13; n=2; Arabidopsis
           thaliana|Rep: Arabidopsis thaliana genomic DNA,
           chromosome 5, TAC clone:K1O13 - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 326

 Score = 33.1 bits (72), Expect = 4.8
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 414 ILRHGLLCVVRVEIFS----KKRFKCKNENVIEFKMADVKWSPFCCNERNL 274
           IL+ G  C VR+E  S    KKR +CK  N I F   +V +    C+ RNL
Sbjct: 134 ILKPGFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNFCSHRNL 184


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 531,921,620
Number of Sequences: 1657284
Number of extensions: 9802658
Number of successful extensions: 22069
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22061
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39154548218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)