Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00347
         (572 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)               31   0.67 
SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            28   6.2  
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     27   8.2  

>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
          Length = 655

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = -3

Query: 387 VRVEIFSKKRF---KCKNENVIEFKMADVKWSPFCCNERNLNLNF 262
           VR  +F   RF   KC N+  ++  MA   W+    NE+ LN  F
Sbjct: 610 VRESVFLSARFFIMKCNNQRNLDISMAKGIWATTIANEKKLNRAF 654


>SB_17155| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = -3

Query: 372 FSKKRFKCK-NENVIEFKMADVKWSPFC 292
           F  KR K   NE +  FK  +V W PFC
Sbjct: 277 FDDKRKKAVFNEKICGFKWTEVFWEPFC 304


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +2

Query: 371 KISTRTTHSNPCRKIYCLSVFNWRSILIVCIAISPGRRPLADP 499
           KI   T  SNPCR  YC    +   I ++ + +   + P+ DP
Sbjct: 389 KIPNATFASNPCRIQYCTQEISMTPIHVLLLIV---KAPILDP 428


>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +2

Query: 326  NSITFSFLHLNRFLEKISTRTTHSNPCRKIYCLSVFN 436
            +SI  +  H+NR  EKI +  TH +   K  C+S  N
Sbjct: 959  SSINATLSHINRRFEKIKSSVTHKHRSLK-QCVSQLN 994


>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 935

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 395 CV*CEWKFSLKNDLNARTRTL 333
           C  CEWKFS K  L    RT+
Sbjct: 217 CEKCEWKFSQKGHLERHMRTV 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,572,949
Number of Sequences: 59808
Number of extensions: 328978
Number of successful extensions: 672
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)