Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00347
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034488-7|CAA22452.1|  396|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.2  

>AL034488-7|CAA22452.1|  396|Caenorhabditis elegans Hypothetical
           protein Y54G11A.8a protein.
          Length = 396

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 11  SGGRSRERNFDYGGEPNRNR--GRWRRTQETEAS*GVNEIAL 130
           S GRSR+++  +GG   +    GRW R  ++ A+ G   +AL
Sbjct: 30  SSGRSRQQHHRHGGSGGKTNGGGRWSRYGKSAATGGTTVLAL 71


>Z70780-5|CAD91633.1|  779|Caenorhabditis elegans Hypothetical
           protein F46B6.5c protein.
          Length = 779

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 8   RSGGRSRERNFDYGGEPNRNR--GRWRRTQETE 100
           RSGGRS+ R+  YG  P ++R     +R ++TE
Sbjct: 433 RSGGRSQSRSLRYGSSPQQSRPVEEQKRHRDTE 465


>Z70780-4|CAD54137.2|  786|Caenorhabditis elegans Hypothetical
           protein F46B6.5b protein.
          Length = 786

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 8   RSGGRSRERNFDYGGEPNRNR--GRWRRTQETE 100
           RSGGRS+ R+  YG  P ++R     +R ++TE
Sbjct: 433 RSGGRSQSRSLRYGSSPQQSRPVEEQKRHRDTE 465


>Z70780-3|CAA94828.2|  828|Caenorhabditis elegans Hypothetical
           protein F46B6.5a protein.
          Length = 828

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 8   RSGGRSRERNFDYGGEPNRNR--GRWRRTQETE 100
           RSGGRS+ R+  YG  P ++R     +R ++TE
Sbjct: 433 RSGGRSQSRSLRYGSSPQQSRPVEEQKRHRDTE 465


>Z82086-4|CAB04998.1|  329|Caenorhabditis elegans Hypothetical
           protein ZK228.7 protein.
          Length = 329

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = -1

Query: 209 RYYRLFYGHVLLNG*IIIYIPVSFARIALSRLLLTRLPFP 90
           RY+RL  GH   N   I+YI + +  IALS ++ T +  P
Sbjct: 119 RYHRLINGHKSKNWIRIVYIVIHYT-IALSYVMPTYVSAP 157


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,288,111
Number of Sequences: 27780
Number of extensions: 239279
Number of successful extensions: 540
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 526
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 540
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)