Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00347
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   0.93 
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.0  
DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    21   6.6  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 350 HLNRFLEKISTRTTHSNPC 406
           HLNR   +IST  T + PC
Sbjct: 321 HLNRLGREISTYFTFTRPC 339


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 ILNSITFSFLHLNRFLEKISTRTTHSNPCRKIY 418
           I++S++   +H N   +       ++N C+K+Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 ILNSITFSFLHLNRFLEKISTRTTHSNPCRKIY 418
           I++S++   +H N   +       ++N C+K+Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 ILNSITFSFLHLNRFLEKISTRTTHSNPCRKIY 418
           I++S++   +H N   +       ++N C+K+Y
Sbjct: 81  IISSLSNKTIHNNNNYKYNYNNNNYNNNCKKLY 113


>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 8/33 (24%), Positives = 18/33 (54%)
 Frame = +2

Query: 320 ILNSITFSFLHLNRFLEKISTRTTHSNPCRKIY 418
           I++S++   +H N   +       ++N C+K+Y
Sbjct: 81  IISSLSNRTIHNNNNYKYNYNNNNYNNNCKKLY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,427
Number of Sequences: 438
Number of extensions: 3242
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)