Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00347
         (572 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70 (...    33   0.10 
At5g41270.1 68418.m05016 expressed protein                             33   0.14 
At4g07944.1 68417.m01272 hypothetical protein                          27   8.9  

>At3g50670.1 68416.m05542 U1 small nuclear ribonucleoprotein 70
           (U1-70k)
          Length = 427

 Score = 33.5 bits (73), Expect = 0.10
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = +2

Query: 14  GGRSRERNFDYGGEPNRNRGRWRRTQ 91
           GGRSRER+ +Y GEP   RG +   Q
Sbjct: 365 GGRSRERDAEYRGEPEETRGYYEDDQ 390


>At5g41270.1 68418.m05016 expressed protein 
          Length = 258

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -3

Query: 414 ILRHGLLCVVRVEIFS----KKRFKCKNENVIEFKMADVKWSPFCCNERNL 274
           IL+ G  C VR+E  S    KKR +CK  N I F   +V +    C+ RNL
Sbjct: 78  ILKPGFNCNVRIEKVSANVKKKRNRCKKSNNICFPQNNVVYHCNFCSHRNL 128


>At4g07944.1 68417.m01272 hypothetical protein
          Length = 193

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 180 PIERLNNNIYTCLVRTYSAISFTPYEASVSCVRRQRPLFLL 58
           PIE L N +YTC + T +   F  +   +      RP F L
Sbjct: 36  PIETLRNLVYTCDINTLAIDEFMTWPTLLQPDSTFRPYFEL 76


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,358,409
Number of Sequences: 28952
Number of extensions: 213595
Number of successful extensions: 491
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)