Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00346
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 39 4e-04
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 39 4e-04
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 29 0.58
SPAC637.12c |mst1||histone acetyltransferase Mst1|Schizosaccharo... 28 0.77
SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|ch... 27 1.3
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 27 1.8
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 25 7.2
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 7.2
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po... 25 9.5
SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr ... 25 9.5
SPBP8B7.10c |||U3 snoRNP-associated protein Utp16 |Schizosacchar... 25 9.5
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 39.1 bits (87), Expect = 4e-04
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGG-GNEG-IVHELHVFNTTTNQWF 245
W KV G P PR GH A ++ ++ VFGG ++G +++L+ F ++ W+
Sbjct: 280 WSKV-ETFGVAPNPRAGHAASVVEGILYVFGGRASDGTFLNDLYAFRLSSKHWY 332
Score = 32.7 bits (71), Expect = 0.036
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = +3
Query: 84 LKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGG------NEGIVHELHVFNTTTNQW 242
L WQK N +G +P R+GH + + +FGG N+ + +L+ NT+ ++W
Sbjct: 173 LVWQKA-NASGARPSGRYGHTISCLGSKICLFGGRLLDYYFNDLVCFDLNNLNTSDSRW 230
Score = 30.7 bits (66), Expect = 0.14
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +3
Query: 114 GPQPRPRHGHRAVAIKXLMIVFGG-GNEGIV----HELHVFNTTTNQW 242
G P PR GH ++ I IVFGG N + + L++ NT++ W
Sbjct: 128 GETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVW 175
Score = 29.9 bits (64), Expect = 0.25
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +2
Query: 296 VVDGTRLLVFGGMVEYGKYSNDLYELQASRWEW 394
VV+G L VFGG G + NDLY + S W
Sbjct: 300 VVEGI-LYVFGGRASDGTFLNDLYAFRLSSKHW 331
Score = 29.1 bits (62), Expect = 0.44
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Frame = +2
Query: 260 GEVPPGCAAYGFVVDGTRLLVFGGMVEY---GKYSNDLYELQASRWEWXXXXXXXXXXXX 430
GE P + ++ G +VFGG+ + + N LY L S W
Sbjct: 128 GETPSPRLGHASILIGNAFIVFGGLTNHDVADRQDNSLYLLNTSSLVW----QKANASGA 183
Query: 431 XXXXXXGHSFTLLNGKVYLF 490
GH+ + L K+ LF
Sbjct: 184 RPSGRYGHTISCLGSKICLF 203
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 39.1 bits (87), Expect = 4e-04
Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Frame = +3
Query: 84 LKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGG-GNEG-IVHELHVFNTTTNQW 242
L W +V + G P PR GH+A I + ++GG N+G I++EL FN + +W
Sbjct: 283 LSWTEVRS-IGRFPGPREGHQATTIDDTVYIYGGRDNKGLILNELWAFNYSQQRW 336
Score = 33.1 bits (72), Expect = 0.027
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +3
Query: 87 KWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEG-IVHELHVFNT 227
+W V + P P PR GH + + + +FGG +G ++++H+F+T
Sbjct: 155 QWNLV-STQSPLPSPRTGHSMLLVDSKLWIFGGECQGKYLNDIHLFDT 201
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 28.7 bits (61), Expect = 0.58
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 381 EACNSYKSFEYLPYSTMPPKTNRRVPSTTKP 289
EA + SF P +PP+ + VP T+KP
Sbjct: 926 EALRAVSSFRRPPRQLIPPQQSTNVPGTSKP 956
>SPAC637.12c |mst1||histone acetyltransferase
Mst1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 463
Score = 28.3 bits (60), Expect = 0.77
Identities = 16/50 (32%), Positives = 22/50 (44%)
Frame = -2
Query: 402 KRFHSHLEACNSYKSFEYLPYSTMPPKTNRRVPSTTKP*AAHPGGTSPFG 253
K+ H ++ K+ + T P KT PST KP + P G S G
Sbjct: 87 KKAHGKGKSSKRPKAVDRRRSITAPSKTEPSTPSTEKPEPSTPSGESDHG 136
>SPBC651.06 |mug166||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 234
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 360 SFEYLPYSTMPPKTNRRVPSTTKP*AAHPGGTSP 259
+F +PY + P +R PS+ A+ G TSP
Sbjct: 152 TFTAVPYDSCLPAPDRHTPSSASSRASETGTTSP 185
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 27.1 bits (57), Expect = 1.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 394 ETFKTTATKAGSSTLSTTRSQLYASQWESIPVCGLANETTIQKIHTEI 537
ET+ TAT GS+ ST S + ++Q ++ N T K T +
Sbjct: 222 ETYTVTATNGGSTITSTGASTVTSTQPSTVTSTQRKNTATTTKTTTYV 269
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/55 (30%), Positives = 23/55 (41%)
Frame = +3
Query: 57 IVKMKENAVLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVF 221
I++ + L QK Y P P + G RA + V G GIVH+ F
Sbjct: 271 ILERFQGKALDGQK-YEPLFPYFKSTFGERAFKLYSADYVEEGSGTGIVHQAPAF 324
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.0 bits (52), Expect = 7.2
Identities = 17/74 (22%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFG--GGNEG-----IVHELHVFNTTTNQW-F 245
W++V +P PR+ H +I FG G N+ +++++ +++ T QW
Sbjct: 71 WKQVEYQGNQKPIPRYFHSGDLWNNKLIFFGGMGFNDDTKCLYVLNDIDIYDIETKQWSH 130
Query: 246 VP--VQKEKSHQDA 281
+P + + +++ DA
Sbjct: 131 IPGMITENQTNDDA 144
>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 166
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -2
Query: 411 SGFKRFHSHLEACNSYKSFEYLPYSTMPPKTNRRVPSTTKP 289
+GF+R+ ++E N F Y Y ++ T+ +VP P
Sbjct: 70 AGFQRYIVNVEFSNVQSYFRYYNYISLYFVTHSKVPLNRLP 110
>SPAC227.06 |||Rab GTPase binding |Schizosaccharomyces pombe|chr
1|||Manual
Length = 249
Score = 24.6 bits (51), Expect = 9.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -3
Query: 524 IFWIVVSLASPQTGILS 474
I W+ VSLA+P G+LS
Sbjct: 170 IVWLPVSLATPPFGLLS 186
>SPBP8B7.10c |||U3 snoRNP-associated protein Utp16
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 346
Score = 24.6 bits (51), Expect = 9.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Frame = -2
Query: 408 GFKRFHSHLEACNSY--------KSFEYLPYSTMPPKT 319
G K+FHSH + +SY KSF L + + KT
Sbjct: 56 GIKKFHSHCQLSSSYTNSGQKSFKSFNSLRFIVLKSKT 93
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,377,182
Number of Sequences: 5004
Number of extensions: 47742
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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