Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00346
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23) 111 5e-25
SB_43498| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34) 37 0.009
SB_37532| Best HMM Match : Kelch_1 (HMM E-Value=1.8e-09) 36 0.016
SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.049
SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37) 33 0.15
SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.26
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36) 29 1.8
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 29 1.8
SB_5543| Best HMM Match : Kelch_1 (HMM E-Value=1.4e-06) 29 1.8
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_32939| Best HMM Match : Kelch_2 (HMM E-Value=1.7e-18) 28 4.2
SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42) 28 4.2
SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77) 27 7.4
SB_35699| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.4
>SB_55417| Best HMM Match : Kelch_2 (HMM E-Value=4.8e-23)
Length = 1153
Score = 111 bits (266), Expect = 5e-25
Identities = 53/98 (54%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Frame = +2
Query: 257 KGEVPPGCAAYGFVVDGTRLLVFGGMVEYGKYSNDLYELQASRWEW--XXXXXXXXXXXX 430
+G++PPGCAAYGF+ DGTRL++FGGMVEYG+YSN++YELQASRWEW
Sbjct: 63 RGDIPPGCAAYGFICDGTRLILFGGMVEYGRYSNEMYELQASRWEWKKLKPKPPKTAGVP 122
Query: 431 XXXXXXGHSFTLLNGKVYLFADWPMKRRS-KKYIPRYL 541
GHSFTL+ K YLFA K IPRYL
Sbjct: 123 PPCPRLGHSFTLIGHKAYLFAGLANDSDDPKNNIPRYL 160
Score = 109 bits (263), Expect = 1e-24
Identities = 45/58 (77%), Positives = 51/58 (87%)
Frame = +3
Query: 78 AVLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFVP 251
A +KW+K+ N TGP PRPRHGHRAVAI+ LM+VFGGGNEGIV ELHV+NT TNQWFVP
Sbjct: 3 AAMKWKKITNSTGPMPRPRHGHRAVAIRELMVVFGGGNEGIVDELHVYNTATNQWFVP 60
>SB_43498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 248
Score = 38.7 bits (86), Expect = 0.003
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = +2
Query: 236 SVVRTSPKGEVPPGCAAYGFVVDGTRLLVFGGMVEYGKYSNDLYELQ 376
S + +P G+VPP A+ V G RL +FGGM G +D Y L+
Sbjct: 178 SWTKLNPTGDVPPSRTAHAAVAIGHRLYLFGGMNGLGMALDDFYVLE 224
Score = 37.5 bits (83), Expect = 0.007
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 6 RAHPEQYI---RCIAFSNKCIVKMKENAVLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIV 176
++HPE+++ N V++ + W ++ +G QP RHGH VAI + +
Sbjct: 98 KSHPERFVVFGGAQQDQNLNDVQVIDTETDSWSQL-TTSGEQPCCRHGHIMVAIGTSIFL 156
Query: 177 FGG-GNEGIVHELHVFNTTTNQW 242
GG + +L FNT N W
Sbjct: 157 HGGMAGSDMFDDLFQFNTENNSW 179
Score = 33.9 bits (74), Expect = 0.085
Identities = 17/34 (50%), Positives = 20/34 (58%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGN 191
W K+ NPTG P R H AVAI + +FGG N
Sbjct: 179 WTKL-NPTGDVPPSRTAHAAVAIGHRLYLFGGMN 211
>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
Length = 405
Score = 37.1 bits (82), Expect = 0.009
Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Frame = +3
Query: 96 KVYNP--TGPQPRPRHGHRAVAIKXLMIVFGG----GNEGIVHELHVFNTTTNQW 242
K NP T P P PR GHR VA + VFGG +E + EL FN + W
Sbjct: 12 KTINPRNTSPSPLPRSGHRCVADDRNVYVFGGYSPHYSEKLFRELWRFNIASQCW 66
Score = 30.3 bits (65), Expect = 1.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Frame = +3
Query: 87 KWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGI-------VHELHVFNTTTNQWF 245
+W+ V P PR+ H AV K V GGG + ++H F TN+W
Sbjct: 205 EWKYVSTQNESVPFPRYRHEAVDYKGSFYVIGGGMGSTDPQEFYNLDKVHAFCYQTNKWQ 264
Query: 246 V 248
V
Sbjct: 265 V 265
>SB_37532| Best HMM Match : Kelch_1 (HMM E-Value=1.8e-09)
Length = 118
Score = 36.3 bits (80), Expect = 0.016
Identities = 18/36 (50%), Positives = 23/36 (63%)
Frame = +3
Query: 87 KWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNE 194
KW+K++ GP P R GH A+ I MIVFGG N+
Sbjct: 59 KWKKLHCE-GPMPDRRLGHCAIIIYGQMIVFGGMND 93
>SB_10970| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 34.7 bits (76), Expect = 0.049
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = +3
Query: 81 VLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIV-FG-GGNEGIVHELHVFNTTTNQW 242
++ WQ+V G P GH A + M+V FG G EG ++ ++ TN W
Sbjct: 495 LMSWQEVSPKGGNTPLAVSGHSATVVGGKMVVLFGYGPEEGFTQKVQEYDLMTNSW 550
Score = 27.9 bits (59), Expect = 5.6
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWF 245
W K+ P R GH A+ I M + GG N ++++ V + T N F
Sbjct: 667 WNKMPTKDLPILSERFGHTAIQINSTMFIVGGFNGTMLND--VLSYTVNALF 716
>SB_26836| Best HMM Match : BTB (HMM E-Value=1.1e-37)
Length = 521
Score = 33.1 bits (72), Expect = 0.15
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 129 PRHGHRAVAIKXLMIVFGGGNEGIVHEL-HVFNTTTNQWFV 248
PR GH ++ L+ GG N+ +++++ ++ T N W V
Sbjct: 325 PRSGHCVASVSGLVYAIGGENDSLIYDITECYDPTLNSWSV 365
>SB_16058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 412
Score = 32.3 bits (70), Expect = 0.26
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +3
Query: 120 QPRPRHGHRAVAIKXLMIVFGGG-NEGIVHELHVFNTTTNQWFVPV 254
QP R GH A ++ MIVFGG + +++ V + QW P+
Sbjct: 199 QPCERAGHAACIVEDRMIVFGGAQRQSRFNDVWVLDLNDMQWSTPL 244
Score = 30.7 bits (66), Expect = 0.80
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)
Frame = +3
Query: 87 KWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGG----------GNEGIVHELHVFNTTTN 236
KW ++ +G P P+ VA K +IVFGG N +++H+ +TTT
Sbjct: 125 KWTRL-RISGSPPPPKECATMVAHKKRVIVFGGWCQPSRTGCVSNARFHNDVHILDTTTL 183
Query: 237 QWFVPVQK 260
W P K
Sbjct: 184 TWSSPCSK 191
>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 31.9 bits (69), Expect = 0.34
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +3
Query: 132 RHGHRAVAIKXLMIVFGGG-NEGIVHELHVFNTTTNQW 242
RH H K ++VFGG G+ +EL FN T+ W
Sbjct: 192 RHSHTVSLYKDSLLVFGGDTGTGLSNELWQFNLTSRLW 229
>SB_6593| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 30.7 bits (66), Expect = 0.80
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Frame = +3
Query: 96 KVYNPTG------PQPR-PRHGHRAVAIKXLMIVFGGGNEGIVHELHV--FNTTTNQW 242
+VYNP P PR PR H AVA + + V GG ++GI + V F+ + W
Sbjct: 427 EVYNPIRNTWSFVPVPRIPRRNHAAVATETHLYVIGGDSDGIEPTVSVERFDPAASAW 484
>SB_52863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 575
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +3
Query: 123 PRPRHGHRAVAIKXLMIVFGGGNE-GIVHELHVFNTTTNQW 242
P PR+ H AV +M+VFGG E G+ +E+ + + W
Sbjct: 472 PTPRYFHCAVIHAGVMVVFGGLTEQGVSNEVWHLSLSPPSW 512
>SB_45623| Best HMM Match : BTB (HMM E-Value=1.4e-36)
Length = 574
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +3
Query: 99 VYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHEL-HVFNTTTNQW 242
V+ P +PR G A +I + V GG + I H+ V++ +T +W
Sbjct: 434 VWVSAAPMNQPRFGASAASIDNKVYVIGGCHGRITHQSGEVYDPSTERW 482
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -2
Query: 447 SRGQGGRPCFGGSGFKRFHSHLEACNSYKSFEYLPYSTMPPKTNRRVP 304
S GQ G+ G+ + +S E SY+ Y P PPKT ++P
Sbjct: 394 SSGQSGKGYIHGTDGQ--YSPTETDESYRLMTYFPIDGRPPKTVEKLP 439
>SB_5543| Best HMM Match : Kelch_1 (HMM E-Value=1.4e-06)
Length = 260
Score = 29.5 bits (63), Expect = 1.8
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Frame = +3
Query: 87 KWQKVYNPTGPQP---RP--RHGHRAVAIKXLMIVFGGGN--EGIVHELHVFNTT 230
+W K+ P+ P P R+GH A + + +FGG + +G + L+ F+TT
Sbjct: 4 RWTKLQTPSEEDPCECTPYMRYGHSASIVDDTVYIFGGRSDVQGACNTLYCFDTT 58
Score = 27.1 bits (57), Expect = 9.8
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +3
Query: 78 AVLKWQKVYNPT-GPQPRPRHGHRAVAIKXLMIVFGGGNE 194
A L W + PT G P R GH A I + +FGG E
Sbjct: 77 ATLTWSRP--PTKGKPPAARDGHTACVIGKKIYIFGGYEE 114
>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 771
Score = 28.3 bits (60), Expect = 4.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 111 TGPQPRPRHGHRAVAIKXLMIVFGG 185
+G +P PR GH + + +++FGG
Sbjct: 593 SGDKPTPRSGHSSCLLDSKLVIFGG 617
>SB_32939| Best HMM Match : Kelch_2 (HMM E-Value=1.7e-18)
Length = 493
Score = 28.3 bits (60), Expect = 4.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 183 GGNEGIVHELHVFNTTTNQW 242
G + G + +L +FNT+TNQW
Sbjct: 326 GRDPGFLSDLWLFNTSTNQW 345
>SB_27263| Best HMM Match : Kelch_1 (HMM E-Value=2.10055e-42)
Length = 559
Score = 28.3 bits (60), Expect = 4.2
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +3
Query: 129 PRHGHRAVAIKXLMIVFGG--GNEGIVHELHVFNTTTNQW 242
PR+ H AVA+ + V GG G+ I+ + ++ T +W
Sbjct: 439 PRYAHCAVALHGNIYVMGGQSGSGNILRSVEKYSPRTGEW 478
>SB_41168| Best HMM Match : Borrelia_orfA (HMM E-Value=0.77)
Length = 738
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = -3
Query: 380 RLVIRTNHLNTCRTLPCRQKLTGAYRLPRSRRQRILV 270
R + HL R L RQK RL + RRQRIL+
Sbjct: 381 RQALIRKHLARLRDLRSRQKRALRIRLAKLRRQRILM 417
>SB_35699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 27.5 bits (58), Expect = 7.4
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -2
Query: 474 PLRSVKL*PSRGQGGRPCFGGSGFKRFHSHLEAC 373
P++ + P + +P F +GF H H+EAC
Sbjct: 11 PMKGTRFRPLSLELPKPLFPVAGFPIIHHHIEAC 44
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,223,688
Number of Sequences: 59808
Number of extensions: 376556
Number of successful extensions: 990
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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