Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00346
(541 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 rela... 86 1e-17
AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell fac... 86 1e-17
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 34 0.075
Z81489-14|CAN86572.1| 420|Caenorhabditis elegans Hypothetical p... 33 0.17
Z81489-13|CAB04012.1| 426|Caenorhabditis elegans Hypothetical p... 33 0.17
Z81087-2|CAN86636.1| 420|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81087-1|CAB03122.1| 426|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical pr... 32 0.23
Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical pr... 31 0.40
Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical pr... 31 0.40
AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin pro... 31 0.40
Z69793-3|CAA93672.2| 709|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical p... 28 3.7
Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical pr... 27 6.5
AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane... 27 6.5
AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical ... 27 8.6
>U61948-8|AAB03147.2| 782|Caenorhabditis elegans Human hcf1 related
protein 1 protein.
Length = 782
Score = 86.2 bits (204), Expect = 1e-17
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = +3
Query: 69 KENAVLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFV 248
+E V++W+ V TGP P+PRHGHRAV +K L+++FGGGNEG++ ELH +NT +W
Sbjct: 23 QEKNVVRWRIVQQSTGPNPKPRHGHRAVVLKELIVIFGGGNEGMIDELHAYNTQKREWTA 82
Query: 249 P 251
P
Sbjct: 83 P 83
Score = 74.9 bits (176), Expect = 3e-14
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Frame = +2
Query: 248 TSPK--GEVPPGCAAYGFVVDGTRLLVFGGMVEYGKYSNDLYELQASRWEWXXXXXXXXX 421
T+P+ G+VP AA+G + G ++ FGGM EYGKY+NDLYELQ++RWEW
Sbjct: 81 TAPQCCGDVPTPAAAFGAISLGNKIYRFGGMTEYGKYTNDLYELQSTRWEWRRLNPRVHS 140
Query: 422 XXXXXXXXXGHSFTL--LNGKVYLFADWPMKRRS-KKYIPRYL 541
GHSF + + K Y+F K+ +P YL
Sbjct: 141 NGHLPCPRIGHSFVVSQKSQKAYVFGGLSNDLNDPKRNVPHYL 183
Score = 33.9 bits (74), Expect = 0.075
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 84 LKWQKVYNPTGPQPRPRHGHRAVAIKX----LMIVFGGGNEGIVHELHVFNTTTNQW 242
L W+K+ N TGP P R H AV + M+V+GG N + +L N T W
Sbjct: 197 LIWEKL-NATGPGPISRESHTAVIYEKDSISRMVVYGGMNGVRLGDLWYLNLNTLHW 252
>AF072907-1|AAD12580.1| 782|Caenorhabditis elegans host cell factor
1 protein.
Length = 782
Score = 86.2 bits (204), Expect = 1e-17
Identities = 32/61 (52%), Positives = 45/61 (73%)
Frame = +3
Query: 69 KENAVLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFV 248
+E V++W+ V TGP P+PRHGHRAV +K L+++FGGGNEG++ ELH +NT +W
Sbjct: 23 QEKNVVRWRIVQQSTGPNPKPRHGHRAVVLKELIVIFGGGNEGMIDELHAYNTQKREWTA 82
Query: 249 P 251
P
Sbjct: 83 P 83
Score = 74.9 bits (176), Expect = 3e-14
Identities = 40/103 (38%), Positives = 55/103 (53%), Gaps = 5/103 (4%)
Frame = +2
Query: 248 TSPK--GEVPPGCAAYGFVVDGTRLLVFGGMVEYGKYSNDLYELQASRWEWXXXXXXXXX 421
T+P+ G+VP AA+G + G ++ FGGM EYGKY+NDLYELQ++RWEW
Sbjct: 81 TAPQCCGDVPTPAAAFGAISLGNKIYRFGGMTEYGKYTNDLYELQSTRWEWRRLNPRVHS 140
Query: 422 XXXXXXXXXGHSFTL--LNGKVYLFADWPMKRRS-KKYIPRYL 541
GHSF + + K Y+F K+ +P YL
Sbjct: 141 NGHLPCPRIGHSFVVSQKSQKAYVFGGLSNDLNDPKRNVPHYL 183
Score = 33.9 bits (74), Expect = 0.075
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +3
Query: 84 LKWQKVYNPTGPQPRPRHGHRAVAIKX----LMIVFGGGNEGIVHELHVFNTTTNQW 242
L W+K+ N TGP P R H AV + M+V+GG N + +L N T W
Sbjct: 197 LIWEKL-NATGPGPISRESHTAVIYEKDSISRMVVYGGMNGVRLGDLWYLNLNTLHW 252
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 33.9 bits (74), Expect = 0.075
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Frame = +3
Query: 72 ENAVLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNE-------GIVHELHVFNTT 230
+ A LKW +V + P P V +I+FGG + + ELH F+T+
Sbjct: 176 DTATLKWSRVIISSAPYPSAMCYASLVTWGTQLILFGGNDNRRRCPFANVPPELHYFDTS 235
Query: 231 TNQW-FVP 251
T+ W +VP
Sbjct: 236 TSTWRYVP 243
>Z81489-14|CAN86572.1| 420|Caenorhabditis elegans Hypothetical
protein F53E4.1b protein.
Length = 420
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEG---IVHELHVFNTTTNQW 242
W+KV G P R GH AV M VFGG E E +VF+ T+ W
Sbjct: 131 WKKV-EIEGFVPPSRDGHTAVVWNNQMFVFGGYEEDAQRFSQETYVFDFATSTW 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 GPQPRPRHGHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQW 242
G P R+GH V + V+GG N+ G + LH ++ N W
Sbjct: 87 GAVPYQRYGHTVVEYQGKAYVWGGRNDDYGACNLLHEYDPEYNVW 131
>Z81489-13|CAB04012.1| 426|Caenorhabditis elegans Hypothetical
protein F53E4.1a protein.
Length = 426
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEG---IVHELHVFNTTTNQW 242
W+KV G P R GH AV M VFGG E E +VF+ T+ W
Sbjct: 131 WKKV-EIEGFVPPSRDGHTAVVWNNQMFVFGGYEEDAQRFSQETYVFDFATSTW 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 GPQPRPRHGHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQW 242
G P R+GH V + V+GG N+ G + LH ++ N W
Sbjct: 87 GAVPYQRYGHTVVEYQGKAYVWGGRNDDYGACNLLHEYDPEYNVW 131
>Z81087-2|CAN86636.1| 420|Caenorhabditis elegans Hypothetical
protein F53E4.1b protein.
Length = 420
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEG---IVHELHVFNTTTNQW 242
W+KV G P R GH AV M VFGG E E +VF+ T+ W
Sbjct: 131 WKKV-EIEGFVPPSRDGHTAVVWNNQMFVFGGYEEDAQRFSQETYVFDFATSTW 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 GPQPRPRHGHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQW 242
G P R+GH V + V+GG N+ G + LH ++ N W
Sbjct: 87 GAVPYQRYGHTVVEYQGKAYVWGGRNDDYGACNLLHEYDPEYNVW 131
>Z81087-1|CAB03122.1| 426|Caenorhabditis elegans Hypothetical
protein F53E4.1a protein.
Length = 426
Score = 32.7 bits (71), Expect = 0.17
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEG---IVHELHVFNTTTNQW 242
W+KV G P R GH AV M VFGG E E +VF+ T+ W
Sbjct: 131 WKKV-EIEGFVPPSRDGHTAVVWNNQMFVFGGYEEDAQRFSQETYVFDFATSTW 183
Score = 29.1 bits (62), Expect = 2.1
Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = +3
Query: 114 GPQPRPRHGHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQW 242
G P R+GH V + V+GG N+ G + LH ++ N W
Sbjct: 87 GAVPYQRYGHTVVEYQGKAYVWGGRNDDYGACNLLHEYDPEYNVW 131
>Z72508-1|CAA96641.1| 342|Caenorhabditis elegans Hypothetical
protein F28H7.1 protein.
Length = 342
Score = 32.3 bits (70), Expect = 0.23
Identities = 22/63 (34%), Positives = 31/63 (49%)
Frame = -3
Query: 209 FVNDSFVSAAENYHQXFYGDRAMAMAGSRLRAGRIVHFLPLKYRVFLHFHYTFVTKSNTP 30
FV+D F +YHQ R ++G+ A HFL YR F+ F+ F+T+ P
Sbjct: 75 FVSDGFFEEYSDYHQFIIAFRCSLISGA--YAVLHSHFL---YRFFVLFNNQFLTRWFMP 129
Query: 29 YVL 21
Y L
Sbjct: 130 YGL 132
>Z69790-3|CAD56579.1| 1234|Caenorhabditis elegans Hypothetical
protein F33C8.1b protein.
Length = 1234
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFVPVQKEK 266
W KV +G P+PR H V K + +FGG + V T W + +K
Sbjct: 330 WSKV-EVSGDMPKPRFDHTVVKYKNKLYMFGGVTKTQVRHQTTQAATNELWIFDMGSKK 387
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 138 GHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQWFV 248
GH A I+ M V G N G +H + ++N T +W V
Sbjct: 407 GHSAHVIRSEMFVIFGYNPLFGFMHHVQIYNFETEEWTV 445
>Z69790-2|CAA93653.2| 1271|Caenorhabditis elegans Hypothetical
protein F33C8.1a protein.
Length = 1271
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFVPVQKEK 266
W KV +G P+PR H V K + +FGG + V T W + +K
Sbjct: 330 WSKV-EVSGDMPKPRFDHTVVKYKNKLYMFGGVTKTQVRHQTTQAATNELWIFDMGSKK 387
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 138 GHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQWFV 248
GH A I+ M V G N G +H + ++N T +W V
Sbjct: 407 GHSAHVIRSEMFVIFGYNPLFGFMHHVQIYNFETEEWTV 445
>AF339882-1|AAK14396.1| 1329|Caenorhabditis elegans attractin
protein.
Length = 1329
Score = 31.5 bits (68), Expect = 0.40
Identities = 17/59 (28%), Positives = 24/59 (40%)
Frame = +3
Query: 90 WQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFVPVQKEK 266
W KV +G P+PR H V K + +FGG + V T W + +K
Sbjct: 330 WSKV-EVSGDMPKPRFDHTVVKYKNKLYMFGGVTKTQVRHQTTQAATNELWIFDMGSKK 387
Score = 29.1 bits (62), Expect = 2.1
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Frame = +3
Query: 138 GHRAVAIKXLMIVFGGGNE--GIVHELHVFNTTTNQWFV 248
GH A I+ M V G N G +H + ++N T +W V
Sbjct: 407 GHSAHVIRSEMFVIFGYNPLFGFMHHVQIYNFETEEWTV 445
>Z69793-3|CAA93672.2| 709|Caenorhabditis elegans Hypothetical
protein R03A10.3 protein.
Length = 709
Score = 30.7 bits (66), Expect = 0.70
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 135 HGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFVPVQKEKSH 272
H H A A+K IV N + L FNTT++ +FV + +H
Sbjct: 33 HSHHATAVKTKQIV----NSARLRILQYFNTTSDDYFVVLTNNTTH 74
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical
protein ZK287.4 protein.
Length = 1208
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
Frame = -2
Query: 423 CFGGSGFKRFHSHLEACN-------SYKSFEYLPYSTMPPKTNRRVPST 298
C GGS H+HL +CN S+ + P++ PKT+ VP +
Sbjct: 825 CSGGSPQMSVHTHLLSCNFESDCPYSHDCIQSTPHNLCCPKTSHLVPES 873
>Z70783-11|CAA94860.2| 782|Caenorhabditis elegans Hypothetical
protein ZK856.12 protein.
Length = 782
Score = 28.3 bits (60), Expect = 3.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = -2
Query: 372 NSYKSFEYLPYSTMPPKTNRRVPSTTKP*AAHPGGTSPFG 253
+S S +P S PKTN VP +P A PFG
Sbjct: 499 SSISSHHLVPQSPSVPKTNYTVPVVQRPLTAPEKFRDPFG 538
>Z68120-1|CAA92199.3| 711|Caenorhabditis elegans Hypothetical
protein T24C2.1 protein.
Length = 711
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 345 PYSTMPPKTNRRVPSTTKP 289
PY++ PP+++ + P++TKP
Sbjct: 551 PYASAPPESSTQTPNSTKP 569
>AF218866-1|AAF67103.1| 711|Caenorhabditis elegans transmembrane
protein RAM-5 protein.
Length = 711
Score = 27.5 bits (58), Expect = 6.5
Identities = 8/19 (42%), Positives = 16/19 (84%)
Frame = -2
Query: 345 PYSTMPPKTNRRVPSTTKP 289
PY++ PP+++ + P++TKP
Sbjct: 551 PYASAPPESSTQTPNSTKP 569
>AL021497-3|CAA16405.1| 613|Caenorhabditis elegans Hypothetical
protein Y51A2D.5 protein.
Length = 613
Score = 27.1 bits (57), Expect = 8.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +3
Query: 99 VYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTTTNQWFVPVQKEK 266
++ P P+ +GH A + L ++GG E I +EL T + +++EK
Sbjct: 207 IFLPETPRWLYENGHTEQAEQVLEKIYGGNTEWIEYELAEIKTYAEERQKQMEEEK 262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,337,532
Number of Sequences: 27780
Number of extensions: 278837
Number of successful extensions: 743
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -