Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00346
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    25   0.49 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   6.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   8.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 25.0 bits (52), Expect = 0.49
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = +3

Query: 81  VLKWQKVYNPTGPQPRPRHGHRAVAIKXLMIVFGGGNEGIVHELHVFNTT 230
           V +W++VY P   QP   +  RA   +         ++G + E  VF+TT
Sbjct: 229 VSQWEEVYIPLYQQPERHYERRATPPQPDRT---SKDQGTIGESEVFDTT 275


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +3

Query: 411 CHQSRVFHLVHDSVTALRFSMGKY 482
           C Q   +  VHD  T +    GK+
Sbjct: 470 CDQCEEYEYVHDEYTCMDCGPGKW 493


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 15  PEQYIRCIAFSNKCI 59
           P  Y+R IAFS  C+
Sbjct: 423 PFVYVREIAFSESCL 437


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 98   FLPLKYRVFLHFHYTFVTKS 39
            +  ++YR    FH+T V+ S
Sbjct: 1531 YFTIQYRPINEFHWTLVSNS 1550


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -3

Query: 98   FLPLKYRVFLHFHYTFVTKS 39
            +  ++YR    FH+T V+ S
Sbjct: 1527 YFTIQYRPINEFHWTLVSNS 1546


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,240
Number of Sequences: 438
Number of extensions: 3514
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)