Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00345
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    26   6.2  
SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.2  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.2  

>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/44 (34%), Positives = 21/44 (47%)
 Frame = +1

Query: 37  PPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 168
           P F  FLN+DK       F+  +  EL  G++  R  S +  KV
Sbjct: 35  PSFADFLNMDKPLTADEAFELDRKVELPNGSIHKRLPSWLKTKV 78


>SPAC24H6.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 176 VQRTLSIIPDAVLLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGIN 30
           + R++S+ P     I+ P ISS    L KK  +  + +TF + +N  +N
Sbjct: 74  MNRSISVPPTN---ISVPQISSNPLNLMKKSSDNDIFTTFNDTTNDCMN 119


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 16  DNLYALMPPFETFLNVDKTARLRHFFDNVKTGELI 120
           +N Y +  P + +    +  +L H FD VKT EL+
Sbjct: 104 NNQYVIRNPKDVYYATVQAGKL-HLFDPVKTSELL 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,918,630
Number of Sequences: 5004
Number of extensions: 58634
Number of successful extensions: 162
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)