Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00345
         (718 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0343 - 17748882-17753396                                         30   1.6  
02_05_1133 + 34346894-34347121,34347222-34347283,34347373-343474...    29   2.8  
06_01_0485 - 3444240-3444398,3444507-3444572,3444644-3444724,344...    28   6.4  

>12_02_0343 - 17748882-17753396
          Length = 1504

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = -3

Query: 458 FHIHGFLVDQGEVVSTQEAERRLRRGIIGPSRHTLHA-ANHFVCIWN 321
           F I   L    E V   E ER L RG+   +RHT  A A    C WN
Sbjct: 88  FRIQDELDGTYEAVDDAEEERGLVRGLALHARHTARAIARKLTCKWN 134


>02_05_1133 +
           34346894-34347121,34347222-34347283,34347373-34347460,
           34348005-34348268,34348346-34348586,34348672-34348748,
           34348837-34349007,34349084-34349176,34349257-34349406,
           34349491-34349577,34349656-34349820,34349900-34350019,
           34350244-34350446,34350547-34350696,34350779-34350926,
           34351046-34351129,34351207-34351308
          Length = 810

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 240 YYSSCDKKNVSRNY--LMNDTVCCEVIEVIPDTDKMVCGMKGV 362
           Y  SC++K+  +N   + +  +C E+IE    T+  VC +  +
Sbjct: 407 YKDSCNRKSNQQNLGTIKSSNLCTEIIEFTSPTETAVCNLASI 449


>06_01_0485 -
           3444240-3444398,3444507-3444572,3444644-3444724,
           3444823-3444900,3444980-3445075,3445363-3445405,
           3445498-3445571,3445693-3445781,3445887-3445935,
           3446171-3446227,3446309-3446425,3448633-3448698,
           3449140-3449196,3449271-3449363,3449515-3449662,
           3449753-3449902,3449979-3450181,3450319-3450438,
           3450530-3450694,3450784-3450870,3450951-3451100,
           3451225-3451365,3451399-3451569,3452015-3452091,
           3452175-3452415,3452495-3452758,3452913-3453000,
           3453099-3453481
          Length = 1170

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 240 YYSSCDKKNVSRNY--LMNDTVCCEVIEVIPDTDKMVCGMKGV 362
           Y  +C++K+  +N   + +  +C E+IE    T+  VC +  +
Sbjct: 454 YKDTCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASI 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,417,452
Number of Sequences: 37544
Number of extensions: 362677
Number of successful extensions: 800
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)