Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00345
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)                30   2.2  
SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)                  29   3.8  
SB_27117| Best HMM Match : SAM_1 (HMM E-Value=6.3e-07)                 29   5.0  
SB_58596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_56597| Best HMM Match : COesterase (HMM E-Value=0)                  28   6.6  
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  
SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.7  

>SB_11426| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 522

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
 Frame = +2

Query: 512 CIQFLSEHLGIANMHCTNFSYLRGRFASSEYADELRQAQASK--WAFRSVAEGIEHFKAG 685
           C Q  S  L + +    N  Y      +  Y  E R  +  K  W+F++ +   EH KA 
Sbjct: 98  CSQMFSNPLALQDTRFLNLMY------TMHYNGEKRPFKCDKCWWSFKNPSGLREHIKAV 151

Query: 686 RHSEAFQC 709
            +SE F+C
Sbjct: 152 HNSEKFKC 159


>SB_1785| Best HMM Match : DPPIV_N (HMM E-Value=0.00044)
          Length = 307

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 492 PGFNNPTAFNSSLNILALPTCTA-QISHI*EEDSLHRNTQMNYAK 623
           PG+NNP      +N+ ALP  T  +IS   E +++ +N ++N  K
Sbjct: 204 PGYNNPQVKAMLVNLTALPNVTINEISPPSELETVMQNRELNAKK 248


>SB_33307| Best HMM Match : NAF1 (HMM E-Value=1.5e-18)
          Length = 1085

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +3

Query: 501 NNPTAFNSSLNILALPTCTAQIS-HI*EEDSLHRNTQMNYAKHKQVNGHFVLWQKA 665
           N PT FN S++     TC  ++S      D     T  N  K    N  F LW KA
Sbjct: 70  NQPTDFNGSIDSKTDITCVEEVSDDSRASDYKKMGTSPNNEKPGSFNRLFKLWSKA 125


>SB_27117| Best HMM Match : SAM_1 (HMM E-Value=6.3e-07)
          Length = 367

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 623 AQASKWAFRSVAEGIEHFKAGRHSEAFQ 706
           +Q  +W    VA  + H K G+++EAF+
Sbjct: 296 SQMEEWTVNDVANHLVHIKLGKYAEAFK 323


>SB_58596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 575 LRGRFASSEYADELRQAQASKWAFRSVAEGIEHFKAGRHS 694
           + GR   S    +  +A+   W F  + E I H+++G+H+
Sbjct: 92  IMGRSRPSIKLTDFLRAEIEYWRFIDIGESILHWRSGKHA 131


>SB_56597| Best HMM Match : COesterase (HMM E-Value=0)
          Length = 505

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 100 VKTGELIIGAVINRTASGMMLKVLCTAGPTSRYVADINV 216
           V T +++IG  +N+T +  M ++LC++   S     +NV
Sbjct: 13  VHTKDIVIGLNVNKTLNYAMYRILCSSDTISEDCLFLNV 51


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/46 (39%), Positives = 20/46 (43%)
 Frame = +3

Query: 213  CQGFFTSRKYYSSCDKKNVSRNYLMNDTVCCEVIEVIPDTDKMVCG 350
            C+GF  S   YSSC  K        +    CE  E  P T K VCG
Sbjct: 1349 CEGFNCSSPPYSSCQAK--------DGKATCECSEDCPKTLKPVCG 1386


>SB_6080| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2101

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/38 (39%), Positives = 16/38 (42%)
 Frame = +3

Query: 252  CDKKNVSRNYLMNDTVCCEVIEVIPDTDKMVCGMKGVT 365
            CDK    R  L+N T  CE     PD    VC   G T
Sbjct: 1579 CDKGK--RCLLVNGTATCECFSACPDIYDPVCASNGKT 1614


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,525,325
Number of Sequences: 59808
Number of extensions: 431516
Number of successful extensions: 955
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 953
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)