Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00345
         (718 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.41 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.94 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               23   2.2  
DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    22   5.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   5.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +3

Query: 315 EVIPDTDKMVCGMKGV 362
           +VIP T + VCG+KG+
Sbjct: 532 DVIPGTQEHVCGVKGI 547



 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 236 PTGKKALTLMSATYLEVGPAVQRTLSIIPDAVLLIT 129
           PTG+  L  ++ T L   P +    +I PD+  L+T
Sbjct: 722 PTGQLLLDYLTDTVLAYKPKILGKPTISPDSRHLVT 757


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -2

Query: 654 TERNAHLLACAWRNSSAYSDEANL 583
           T+RN +LLA + RN +  +++ NL
Sbjct: 370 TQRNEYLLALSDRNQNVLNNDLNL 393


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/47 (23%), Positives = 21/47 (44%)
 Frame = +3

Query: 549 TCTAQISHI*EEDSLHRNTQMNYAKHKQVNGHFVLWQKALNILKLED 689
           TC  + SHI + D +  +  +  A  K ++    +  + +N  K  D
Sbjct: 80  TCALEKSHIIQNDEIQLDKLVEMANRKNISIDVKMLSECINANKSTD 126


>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = -3

Query: 407 EAERRLRRGIIGP-SRHTLHAANHFVCIWNNFYDFAANS 294
           E ER     II   S  T+H  N++   +NN Y++  N+
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYKYNYNNKYNYNNNN 110


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = -3

Query: 716 YSSIETLQNVFQL*NVQCLLPQNEMPI 636
           +S  +   N  +  N+QC++P  ++P+
Sbjct: 588 FSFTKLPMNAGEFANLQCIVPTGDLPL 614


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 599 PMKRIFLSNMRNLCSACWQCQDVQRGIECSWIIEAWALLQ-YGFIVFSFHIHGFLVDQ-- 429
           P   I+  N R  C      + VQRG +  + I   A  + +G         G  V Q  
Sbjct: 467 PGTPIYECNKRCNCDIDCINRVVQRGTKMQFCIFRTANGRGWGVKTMKTIKKGSFVTQYV 526

Query: 428 GEVVSTQEAERR 393
           GEV++ +EAE+R
Sbjct: 527 GEVITNEEAEKR 538


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,458
Number of Sequences: 438
Number of extensions: 3749
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)