BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00345 (718 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote... 32 0.44 At4g12700.1 68417.m01994 expressed protein 30 1.8 At1g75160.1 68414.m08730 expressed protein contains Pfam profile... 29 2.3 At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm... 28 7.1 At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family pr... 27 9.4 At1g12100.1 68414.m01400 protease inhibitor/seed storage/lipid t... 27 9.4 >At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein kinase, putative protein kinase Xa21 - Oryza sativa, PIR:A57676 Length = 1010 Score = 31.9 bits (69), Expect = 0.44 Identities = 17/39 (43%), Positives = 23/39 (58%) Frame = -3 Query: 140 LLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAY 24 L++ M+S P+ T K LNL LS F N +GGI A+ Sbjct: 390 LILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAF 428 >At4g12700.1 68417.m01994 expressed protein Length = 561 Score = 29.9 bits (64), Expect = 1.8 Identities = 20/56 (35%), Positives = 27/56 (48%) Frame = +1 Query: 1 TLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 168 T PED L+ TFL + A L+ VKTGE + A N+TA G + + Sbjct: 47 TYEPEDPLFHPSDKITTFLTSNSNATLKSDDSIVKTGEDFMAA--NQTAFGGFINI 100 >At1g75160.1 68414.m08730 expressed protein contains Pfam profile PF04788: Protein of unknown function (DUF620) Length = 395 Score = 29.5 bits (63), Expect = 2.3 Identities = 20/66 (30%), Positives = 30/66 (45%) Frame = +3 Query: 507 PTAFNSSLNILALPTCTAQISHI*EEDSLHRNTQMNYAKHKQVNGHFVLWQKALNILKLE 686 PTA N+ ++ A+ Q S + + T + K G FVLWQK N+ LE Sbjct: 134 PTALNAVKSMYAVGQVRMQGSEMVAGEDEGTGTPVRLGKGSFEVGGFVLWQKNPNLWFLE 193 Query: 687 DILKRF 704 ++ F Sbjct: 194 LVVSGF 199 >At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small chain, putative / ribonucleotide reductase, putative similar to ribonucleotide reductase GI:4151068 from [Nicotiana tabacum] Length = 816 Score = 27.9 bits (59), Expect = 7.1 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Frame = +3 Query: 240 YYSSCDKKNVSRNY--LMNDTVCCEVIEVIPDTDKMVCGMKGV 362 + SC++K+ +N + + +C E+IE T+ VC + + Sbjct: 407 FKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASI 449 >At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family protein / U-box domain-containing protein contains Pfam domain, PF00514: Armadillo/beta-catenin-like repeats and Pfam, PF04564: U-box domain Length = 674 Score = 27.5 bits (58), Expect = 9.4 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -3 Query: 518 ECSWIIEAWALLQYGFIVFSFH 453 +CS + + W LLQ + F+FH Sbjct: 109 DCSRVSKLWLLLQIDIVAFNFH 130 >At1g12100.1 68414.m01400 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein contains Pfam protease inhibitor/seed storage/LTP family domain PF00234 Length = 115 Score = 27.5 bits (58), Expect = 9.4 Identities = 9/20 (45%), Positives = 14/20 (70%) Frame = +3 Query: 288 NDTVCCEVIEVIPDTDKMVC 347 +DT+CC V++ + D D VC Sbjct: 58 SDTLCCSVLQGLVDLDAAVC 77 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,138,211 Number of Sequences: 28952 Number of extensions: 304237 Number of successful extensions: 735 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 735 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1555552968 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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