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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00345
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47570.1 68416.m05179 leucine-rich repeat transmembrane prote...    32   0.44 
At4g12700.1 68417.m01994 expressed protein                             30   1.8  
At1g75160.1 68414.m08730 expressed protein contains Pfam profile...    29   2.3  
At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase sm...    28   7.1  
At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family pr...    27   9.4  
At1g12100.1 68414.m01400 protease inhibitor/seed storage/lipid t...    27   9.4  

>At3g47570.1 68416.m05179 leucine-rich repeat transmembrane protein
           kinase, putative protein kinase Xa21 - Oryza sativa,
           PIR:A57676
          Length = 1010

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = -3

Query: 140 LLITAPMISSPVFTLSKKCLNLAVLSTFRNVSNGGINAY 24
           L++   M+S P+ T   K LNL  LS F N  +GGI A+
Sbjct: 390 LILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAF 428


>At4g12700.1 68417.m01994 expressed protein
          Length = 561

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 20/56 (35%), Positives = 27/56 (48%)
 Frame = +1

Query: 1   TLVPEDNLYALMPPFETFLNVDKTARLRHFFDNVKTGELIIGAVINRTASGMMLKV 168
           T  PED L+       TFL  +  A L+     VKTGE  + A  N+TA G  + +
Sbjct: 47  TYEPEDPLFHPSDKITTFLTSNSNATLKSDDSIVKTGEDFMAA--NQTAFGGFINI 100


>At1g75160.1 68414.m08730 expressed protein contains Pfam profile
           PF04788: Protein of unknown function (DUF620)
          Length = 395

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/66 (30%), Positives = 30/66 (45%)
 Frame = +3

Query: 507 PTAFNSSLNILALPTCTAQISHI*EEDSLHRNTQMNYAKHKQVNGHFVLWQKALNILKLE 686
           PTA N+  ++ A+     Q S +   +     T +   K     G FVLWQK  N+  LE
Sbjct: 134 PTALNAVKSMYAVGQVRMQGSEMVAGEDEGTGTPVRLGKGSFEVGGFVLWQKNPNLWFLE 193

Query: 687 DILKRF 704
            ++  F
Sbjct: 194 LVVSGF 199


>At2g21790.1 68415.m02590 ribonucleoside-diphosphate reductase small
           chain, putative / ribonucleotide reductase, putative
           similar to ribonucleotide reductase GI:4151068 from
           [Nicotiana tabacum]
          Length = 816

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 240 YYSSCDKKNVSRNY--LMNDTVCCEVIEVIPDTDKMVCGMKGV 362
           +  SC++K+  +N   + +  +C E+IE    T+  VC +  +
Sbjct: 407 FKDSCNRKSNQQNLGTIKSSNLCTEIIEYTSPTETAVCNLASI 449


>At5g01830.1 68418.m00102 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 674

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 518 ECSWIIEAWALLQYGFIVFSFH 453
           +CS + + W LLQ   + F+FH
Sbjct: 109 DCSRVSKLWLLLQIDIVAFNFH 130


>At1g12100.1 68414.m01400 protease inhibitor/seed storage/lipid
           transfer protein (LTP) family protein contains Pfam
           protease inhibitor/seed storage/LTP family domain
           PF00234
          Length = 115

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 288 NDTVCCEVIEVIPDTDKMVC 347
           +DT+CC V++ + D D  VC
Sbjct: 58  SDTLCCSVLQGLVDLDAAVC 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,138,211
Number of Sequences: 28952
Number of extensions: 304237
Number of successful extensions: 735
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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