Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00344
(365 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 28 0.39
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 28 0.39
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 0.39
SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces pombe... 27 0.69
SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces pomb... 26 2.1
SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15 |Schizosac... 26 2.1
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 2.1
SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr 1|||... 25 2.8
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 25 2.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 3.7
SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner mem... 25 3.7
SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 4.9
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 25 4.9
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 6.4
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 24 8.5
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S... 24 8.5
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 24 8.5
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 24 8.5
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 24 8.5
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 24 8.5
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 24 8.5
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 24 8.5
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 24 8.5
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 24 8.5
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 24 8.5
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 24 8.5
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 24 8.5
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 24 8.5
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 24 8.5
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 24 8.5
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 28.3 bits (60), Expect = 0.39
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = +1
Query: 22 SSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVYL 162
+S+ RSS + + P+ + SS SSH +RS VY+
Sbjct: 426 NSTSSRSSSHSSSHSLSSLSSKPILTASSSSLLTSSSHTYERSTVYV 472
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 28.3 bits (60), Expect = 0.39
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLHATTVGDI 186
SD +SSD + D + + ++S SS++ DSS S+ TT G++
Sbjct: 270 SDSSSNSSDSEDDSSSDSSDSESESSSEDSDSTSSSSDSDSSSSSEDGNSNTDTTTSGEV 329
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 4 TSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
+S++ SSS S+ E + + + + ESS+EG S S S
Sbjct: 122 SSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 170
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +1
Query: 4 TSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
+S++ SSS S+ E + + + + ESS+EG S S S
Sbjct: 176 SSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEGSDSSSSSSS 224
Score = 24.2 bits (50), Expect = 6.4
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQS 141
SD SSSD SS + + T S +SST SS +S
Sbjct: 299 SDSTSSSSDSDSSSSSEDGNSNTDTTTSGEVSAQSSTNSTSSEES 343
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 0.39
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQ 138
SDER SSD R K++ + R+ +++S +S+ D +
Sbjct: 64 SDERSDSSDSRRGKEDFSISTAEVTRSSLSSSRSTSSRSDKDSE 107
>SPCC830.08c |||Golgi membrane protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 182
Score = 27.5 bits (58), Expect = 0.69
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 108 LSGVSYWSPSSMFHVPVQFLLTASYI 31
L+ + YWS +++VPV +LL A ++
Sbjct: 97 LNVIEYWSQLILYYVPVYWLLKAIFL 122
>SPAC3H8.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1073
Score = 25.8 bits (54), Expect = 2.1
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 86 LQ*LTPERVVRKGILVTNHNAALFIYMQQQWVIFQTPVEYHAIVQETT 229
L+ + E V GI+ +NHN+ + ++ W + +V++ T
Sbjct: 415 LEAILTEGAVLSGIINSNHNSEFYAWLTYPWQTQILRLHLDGVVEDVT 462
>SPBC337.06c |cwf15||complexed with Cdc5 protein Cwf15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 265
Score = 25.8 bits (54), Expect = 2.1
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
+DE S SD N ++ +RR +NS ES +S + S
Sbjct: 114 ADEDASDSDDSVDSSNKNSEVSIKRRKTESNSQESVDSSNSESSDEES 161
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 245 ELIDETSSLERLRDIRPGS 189
ELI T +ER R IRPGS
Sbjct: 782 ELISYTEFIERSRGIRPGS 800
>SPAC823.05c |tlg2||SNARE Tlg2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 2.8
Identities = 14/54 (25%), Positives = 31/54 (57%)
Frame = +3
Query: 204 ITQSFKRRRFIYQLFKYQVRSTTKSFSIFAPWPRSIIASIRRPLCTQTKEIKPK 365
ITQ F+R + + Q+ K Q S T S ++ A ++ ++++ + T++ + + K
Sbjct: 108 ITQDFQRCQKLLQVTKAQTNSATGSEALMA---KNFLSNLASRIQTESAQFRKK 158
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 2.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -1
Query: 350 LGLCA*WTSY*RYNASGPWGEDRETFCGAADLIFEELIDETSSLERLRDI 201
+G A W S N G +G D E + G + F +L + S + L D+
Sbjct: 76 MGFNAIWISPVEKNLEGSYGSDGEAYHGYWNTDFTQLNEHFGSEDDLIDL 125
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 3.7
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = +1
Query: 4 TSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
+S SSS SS + P+T+S SS SS S S
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSSSSSSSSSSS 229
>SPAC9G1.04 |oxa101|oxa1, oxa1-1, oxa1sp1|mitochondrial inner
membrane translocase Oxa101|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 3.7
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 93 YWSPSSMFHVPVQFLLTASYIRRAASF 13
YW PSS+F++ ++L +R F
Sbjct: 265 YWIPSSLFNIVQGYILKNPVVRSKLGF 291
>SPCC1235.11 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 141
Score = 24.6 bits (51), Expect = 4.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 120 FRTTLSGVSYWSPSSMFHVPVQFLL 46
FR L +W P S F +P+ +L
Sbjct: 28 FRKYLCSTHFWGPLSNFGIPIAAIL 52
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 24.6 bits (51), Expect = 4.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 230 FHLSTLQISSPQHHKKFLYLR 292
FH+STL+ +S F+YLR
Sbjct: 560 FHISTLKNASKNDEGNFVYLR 580
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 24.2 bits (50), Expect = 6.4
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Frame = +1
Query: 4 TSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQR--SVVYLHATT 174
+S + SSS SSK + + + ++S +SS SS S + S ++ +TT
Sbjct: 173 SSSSKSSSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTT 231
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 23.8 bits (49), Expect = 8.5
Identities = 6/18 (33%), Positives = 16/18 (88%)
Frame = +2
Query: 296 MAPKHYSVNTTSIMHTNQ 349
M P++YS++++S++H ++
Sbjct: 438 MKPRYYSISSSSVVHPDK 455
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 23.8 bits (49), Expect = 8.5
Identities = 12/42 (28%), Positives = 19/42 (45%)
Frame = +2
Query: 209 AIVQETTFHLSTLQISSPQHHKKFLYLRPMAPKHYSVNTTSI 334
A+ + F +++S Q H L P+ PK S+ SI
Sbjct: 93 ALCNNSAFQALPIKLSDLQKHWPSLKPHPLPPKRVSLGIPSI 134
>SPAC31G5.19 |||ATPase with bromodomain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1190
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +1
Query: 1 GTSDERGSSSDIRSSKQELNRDMKHRRRT 87
G++DE S + S E+ + K RRR+
Sbjct: 10 GSADETQELSPVSDSSDEMPNNAKRRRRS 38
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/36 (27%), Positives = 15/36 (41%)
Frame = +2
Query: 224 TTFHLSTLQISSPQHHKKFLYLRPMAPKHYSVNTTS 331
TT + + +P ++ APKHY V S
Sbjct: 16 TTMSKELISVHNPNPEPVIFKVKTTAPKHYCVRPNS 51
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 23.8 bits (49), Expect = 8.5
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +1
Query: 28 SDIRSSKQELNRDMKHRRRTPVTNSGESSTE 120
SDI K++ NRD P+ ++ ES+ E
Sbjct: 62 SDINGKKRDSNRDKAAVVTAPIASTHESNYE 92
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 23.8 bits (49), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 215 VQETTFHLSTLQISSPQHHKKFLYLRPMAP 304
+QE + T QI+ ++HK + L+P+ P
Sbjct: 950 IQEYVQNCHTCQINKSRNHKPYGPLQPIPP 979
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.126 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,388,289
Number of Sequences: 5004
Number of extensions: 24724
Number of successful extensions: 103
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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