Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00344
(365 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1466 - 33799104-33799229,33799659-33799669,33800052-338002... 29 0.85
11_01_0319 - 2396835-2396951,2397035-2397105,2397219-2397297,239... 29 1.5
03_05_0832 - 28037047-28037315,28037428-28037530,28037664-280376... 29 1.5
04_01_0254 + 3388215-3388553,3388869-3390830 27 4.5
06_03_0274 + 19073634-19073743,19073818-19074013,19074473-19074715 27 6.0
06_03_0097 - 16607936-16608712,16610114-16610320,16611220-166113... 27 6.0
05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111 27 6.0
02_05_0844 - 32144417-32144764,32145588-32145686,32146218-321464... 27 6.0
01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,117... 27 6.0
10_08_0384 - 17430316-17430470,17430647-17430813,17431234-174315... 26 7.9
09_01_0024 + 438288-438542,439020-439069,440096-440351 26 7.9
03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685... 26 7.9
03_01_0458 - 3521938-3522024,3522133-3522213,3522673-3522806,352... 26 7.9
>04_04_1466 -
33799104-33799229,33799659-33799669,33800052-33800200,
33800261-33800299,33800690-33800746,33800839-33801628,
33801705-33801980,33802051-33802117,33802211-33802285,
33802618-33802812,33802927-33803076,33803152-33803522,
33804070-33804193,33804246-33804275,33804306-33804417,
33804919-33804985,33805138-33805180,33805768-33805872
Length = 928
Score = 29.5 bits (63), Expect = 0.85
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 10 DERGSSSDIRSSKQELNRDMKHRR---RTPVTNSGESSTEGDSSHQSQRS 150
D +G D + +E +RD RR + + +T+G SSH S+RS
Sbjct: 721 DAKGERKDYQKDVREKSRDSADRREKGKHEKEDRSRQTTKGSSSHSSRRS 770
>11_01_0319 -
2396835-2396951,2397035-2397105,2397219-2397297,
2397417-2397458,2397670-2397723,2397836-2397868,
2397959-2398039,2398144-2398230,2398313-2398388,
2398633-2398808,2398912-2399034,2399249-2399361,
2399521-2399632,2400054-2400273,2401986-2402314,
2402408-2402713,2403580-2403878,2404079-2404181,
2404266-2404369,2404840-2404906,2404911-2405076,
2405241-2405956
Length = 1157
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/44 (36%), Positives = 25/44 (56%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQ 138
S R SD S +++L+ +HRRR+P + S SS + D S +
Sbjct: 12 SRRRRRDSDDESGERDLDT-RRHRRRSPSSESCSSSGDDDRSRR 54
>03_05_0832 -
28037047-28037315,28037428-28037530,28037664-28037695,
28037788-28038005,28038145-28038260,28038514-28038757,
28039129-28039216,28039513-28039588,28040126-28040164,
28040347-28040405,28041292-28041529
Length = 493
Score = 28.7 bits (61), Expect = 1.5
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Frame = +2
Query: 74 IDEGLQ*LTPE--RVVRKGILVTNHNAALFIYMQQQWVIFQTPVEYHAIVQETTFHLSTL 247
+ + L TPE R+V+ N YM+ Q ++ QTP Y A Q T
Sbjct: 305 VKDRLPKFTPEQARLVKGSADYIGINQYTASYMKGQQLMQQTPTSYSADWQVTYVFAKNG 364
Query: 248 QISSPQHHKKFLYLRP 295
+ PQ + +LY+ P
Sbjct: 365 KPIGPQANSNWLYIVP 380
>04_01_0254 + 3388215-3388553,3388869-3390830
Length = 766
Score = 27.1 bits (57), Expect = 4.5
Identities = 11/51 (21%), Positives = 30/51 (58%)
Frame = +1
Query: 13 ERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLH 165
+RG+ ++RSS++E + ++ RR ++S ++++ G ++ ++ H
Sbjct: 159 QRGNLENMRSSRKEEEKKKENMRRRSSSSSLQNTSRGGRKPDDEQILLIAH 209
>06_03_0274 + 19073634-19073743,19073818-19074013,19074473-19074715
Length = 182
Score = 26.6 bits (56), Expect = 6.0
Identities = 8/27 (29%), Positives = 18/27 (66%)
Frame = -3
Query: 117 RTTLSGVSYWSPSSMFHVPVQFLLTAS 37
RTT + ++++P S++H P + ++ S
Sbjct: 97 RTTAAAAAFFTPPSLYHRPYELIINRS 123
>06_03_0097 - 16607936-16608712,16610114-16610320,16611220-16611336,
16611409-16611690,16611811-16612294,16612791-16612929,
16613138-16613243,16613396-16613562,16613632-16613707,
16614173-16614321,16614813-16614874,16615232-16615335,
16616856-16616950,16617046-16617136,16617785-16617922
Length = 997
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +1
Query: 25 SSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
SSD + +K++ HR R P T+S + E S+RS
Sbjct: 941 SSDSQYTKRKHREKRHHRTRNPDTDSSDHEYEERHKSSSRRS 982
>05_05_0360 - 24395993-24397540,24397626-24397730,24398731-24399111
Length = 677
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 46 KQELNRDMKHRRRTPVTNS 102
K+ELNR+ K+R+R + NS
Sbjct: 265 KEELNRERKNRQRAEIMNS 283
>02_05_0844 -
32144417-32144764,32145588-32145686,32146218-32146410,
32147049-32147107,32147189-32147263,32147557-32147670,
32147776-32147895,32148204-32148216,32148421-32148512,
32149078-32149164,32149254-32149328,32149630-32149680,
32149852-32149947,32150135-32150221,32150312-32150368,
32150475-32150600,32150709-32150949,32151028-32151114,
32151260-32151637,32152847-32153187
Length = 912
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
+DE S S++ S +E + D SG S +GD + RS
Sbjct: 29 ADESESESEVGSGAEEEDDDYVGESSDSAGGSGSGSGDGDGDEEGGRS 76
>01_01_0128 - 1167904-1168749,1168790-1168863,1169419-1169491,
1171148-1171398,1171442-1171687,1172220-1172415,
1172796-1172876,1172966-1173169,1173671-1173880,
1173953-1174174,1174437-1174480,1174974-1175052,
1175066-1175227,1175337-1175564,1175786-1175815,
1175905-1176273,1176356-1176571,1177202-1177683,
1177930-1177975
Length = 1352
Score = 26.6 bits (56), Expect = 6.0
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 8/67 (11%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGD--------SSHQSQRSVVYL 162
SDE S S+ + +++ + KHRR + ++S S D H S RS +
Sbjct: 1182 SDEYDSGSEEENRRKKRSHRRKHRRHSSRSDSDASDYSSDDEERRSSKKDHSSSRSHRHH 1241
Query: 163 HATTVGD 183
H + GD
Sbjct: 1242 HHRSSGD 1248
>10_08_0384 -
17430316-17430470,17430647-17430813,17431234-17431531,
17431797-17431880,17432321-17432437,17433883-17433976,
17434893-17435035,17435134-17435297,17435753-17435918,
17436394-17436560,17436894-17437020,17439805-17439901
Length = 592
Score = 26.2 bits (55), Expect = 7.9
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +2
Query: 191 TPVEYHAIVQETTFHLSTLQISSPQHHKKFLYLRPMAPKHYSVNT 325
TP IV +TTF LS S HH + PK+YS T
Sbjct: 357 TPGLKEDIVVDTTFELSIYNHSRRTHHGTRASYKFHYPKYYSEYT 401
>09_01_0024 + 438288-438542,439020-439069,440096-440351
Length = 186
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Frame = +1
Query: 10 DERGSSSDIRSSKQELNRDMKHRR-----RTPVTNSGESSTEGDSS 132
+ER ++ R++K+ L R K +R R+ N GE G+SS
Sbjct: 129 EERLKEAEERTAKKRLKRQKKKQRKKEKKRSKTNNGGEQPNGGESS 174
>03_05_0967 +
29265465-29266214,29267718-29267944,29268428-29268557,
29268651-29268719,29268803-29268946,29269775-29270011,
29270897-29270998,29271131-29271396,29271766-29273410,
29274449-29275018
Length = 1379
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/40 (30%), Positives = 27/40 (67%)
Frame = +1
Query: 1 GTSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTE 120
G + R +S++ SS L ++ +H++R PV++ G+++T+
Sbjct: 586 GAEEGRPYTSEMNSSSA-LGKE-EHKKRLPVSSEGDNATD 623
>03_01_0458 -
3521938-3522024,3522133-3522213,3522673-3522806,
3523189-3523270,3523420-3523692,3523953-3524162,
3524252-3524337,3525197-3525289,3526003-3526227,
3526320-3526930,3529328-3529395,3529491-3529679,
3529773-3529901,3530013-3532484
Length = 1579
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +1
Query: 4 TSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQS 141
T +ER ++R + L KH + +++ +S + GD + S
Sbjct: 243 TPEERRKEIEVRLAAMRLMEQQKHNATSASSSTSQSQSPGDEAPSS 288
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.126 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,200,871
Number of Sequences: 37544
Number of extensions: 166293
Number of successful extensions: 348
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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