Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00344
(365 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.071
SB_29473| Best HMM Match : CASP_C (HMM E-Value=6.5) 31 0.22
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 29 1.2
SB_54694| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4) 27 3.5
SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41) 27 3.5
SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.7
SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21) 27 4.7
SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39) 27 4.7
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15) 27 6.2
SB_13046| Best HMM Match : La (HMM E-Value=5e-23) 27 6.2
SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.1
SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019) 26 8.1
>SB_17998| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1089
Score = 33.1 bits (72), Expect = 0.071
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 67 MKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLHATTVGDIPDP 195
+K+RRR P+ N+G S+ GDS S R+ +T+ P P
Sbjct: 893 IKNRRRAPIPNTGSESSRGDSG--STRTSPIRSTSTIPSTPPP 933
>SB_29473| Best HMM Match : CASP_C (HMM E-Value=6.5)
Length = 389
Score = 31.5 bits (68), Expect = 0.22
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +1
Query: 16 RGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVY 159
+ + +R SK L H R + G ++ +GD S+QS+ S+V+
Sbjct: 277 QNTRDSLRDSKHHLRDSKDHSRDLRHASCGSATVKGDQSNQSRDSIVH 324
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +1
Query: 7 SDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQS 141
S+ S SD+ S KQ N K+++ TP+ +S ++ S +S
Sbjct: 619 SENDESDSDLVSKKQSGNNLSKNKKTTPLNTKYDSKSDESESEES 663
>SB_54694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 1 GTSDERGSSSDIRSSK-QELNR 63
G DERG +DIR S+ QELNR
Sbjct: 168 GGRDERGVGTDIRGSEYQELNR 189
>SB_46911| Best HMM Match : MSSP (HMM E-Value=4.4)
Length = 424
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 1 GTSDERGSSSDIRSSK-QELNR 63
G DERG +DIR S+ QELNR
Sbjct: 385 GGRDERGVGTDIRGSEYQELNR 406
>SB_33855| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 879
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +1
Query: 1 GTSDERGSSSDIRSSK-QELNR 63
G DERG SDIR S+ QEL+R
Sbjct: 840 GVRDERGVGSDIRGSEYQELHR 861
>SB_7549| Best HMM Match : TraB (HMM E-Value=6.79994e-41)
Length = 478
Score = 27.5 bits (58), Expect = 3.5
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = +1
Query: 73 HRRRTPVTNSGESSTEGDSSHQSQRSVV-----YLHATTVGDIPD 192
H + SG+ ST GDS +RS+ + +VGD+P+
Sbjct: 103 HEAHSVENGSGDPSTPGDSGMSGERSITEELMHNIRRQSVGDLPE 147
>SB_29854| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3235
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 256 KSAAPQKVSLSSPHGPEAL*RQYDVHYAHKP 348
+SA +K S PHG +AL R+ D H +P
Sbjct: 18 QSAFVEKPLQSVPHGQQALRRESDPHTQERP 48
>SB_37439| Best HMM Match : Guanylate_kin (HMM E-Value=2.3e-21)
Length = 609
Score = 27.1 bits (57), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -2
Query: 232 KRRLLNDCVIFDRGLEYHPLLLHVDKQRCVVI 137
K L ++C+ +GL+ HP+L VD Q +I
Sbjct: 195 KLNLASNCIRSMKGLQGHPMLQEVDLQENQII 226
>SB_11157| Best HMM Match : NUC173 (HMM E-Value=9.2e-39)
Length = 1060
Score = 27.1 bits (57), Expect = 4.7
Identities = 16/53 (30%), Positives = 22/53 (41%)
Frame = +2
Query: 188 QTPVEYHAIVQETTFHLSTLQISSPQHHKKFLYLRPMAPKHYSVNTTSIMHTN 346
QT YH +TT ST I++PQ + P Y +NT T+
Sbjct: 905 QTTSTYHITTPQTT---STHHITTPQTTSTYHITTPQTTSTYHINTPQTTSTH 954
Score = 26.2 bits (55), Expect = 8.1
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Frame = +2
Query: 188 QTPVEYHAIVQETT--FHLSTLQISSPQHHKKFLYLRPMAPKH 310
QT +H ETT H+ST Q +S H L P+A H
Sbjct: 652 QTTSTHHITTPETTSTHHISTPQTTSTHHSLHPKLLAPIASVH 694
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +2
Query: 188 QTPVEYHAIVQETTFHLSTLQISSPQHHKK 277
Q PV+ ETT S Q+SSPQH+++
Sbjct: 472 QAPVQNFGQAAETTQGKSEGQLSSPQHNEE 501
>SB_8926| Best HMM Match : adh_short (HMM E-Value=1.5e-15)
Length = 537
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +1
Query: 4 TSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGE 108
TSD+ +S I ++QE + D++HR + T SGE
Sbjct: 120 TSDK--NSLPIEGTRQENSYDLQHRSKNNHTKSGE 152
>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
Length = 442
Score = 26.6 bits (56), Expect = 6.2
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +1
Query: 22 SSSDIRSSKQELNRDMKHRRRTPVTNSGESS 114
S SD+ SSK L++ + RRRT S +S+
Sbjct: 179 SESDLESSKLSLSQSERKRRRTTSETSVDSN 209
>SB_39219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1951
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 43 SKQELNRDMKHRRRTP-VTNSGESSTEGDSSHQSQRSVV 156
SK+EL+RD K + P N E + G+ + VV
Sbjct: 1753 SKEELDRDAKQESKIPEERNKNEMKSAGEDHEMKESDVV 1791
>SB_9366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1221
Score = 26.2 bits (55), Expect = 8.1
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Frame = +1
Query: 34 IRSSKQELNRDMKHR--RRTPVTNSGESSTEGDSSHQSQR 147
+ + + E+++ KHR ++T +S +STEG++S S+R
Sbjct: 969 LENEEPEVSKTSKHRNEKQTKHGHSKTASTEGEASTSSKR 1008
>SB_41601| Best HMM Match : zf-C2H2 (HMM E-Value=0.0019)
Length = 1008
Score = 26.2 bits (55), Expect = 8.1
Identities = 9/21 (42%), Positives = 17/21 (80%)
Frame = +2
Query: 284 YLRPMAPKHYSVNTTSIMHTN 346
Y++P+APK V ++S+++TN
Sbjct: 352 YMQPIAPKPMPVPSSSVLNTN 372
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.312 0.126 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,651,771
Number of Sequences: 59808
Number of extensions: 193595
Number of successful extensions: 466
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 582596255
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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