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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00344
         (365 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   0.49 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   2.0  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          21   3.4  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      21   3.4  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   4.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     21   4.6  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    20   8.0  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 0.49
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = +1

Query: 16  RGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQR 147
           R  S    SS      D++H  R    N GE S   D S + ++
Sbjct: 220 RSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKK 263


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 290 EDRETFCGAADLIFEEL 240
           +DRET   AA+ I EEL
Sbjct: 846 KDRETIISAAEKIAEEL 862


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 93  YWSPSSMFHVP 61
           YW  SS +H+P
Sbjct: 243 YWMSSSQYHMP 253


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 93  YWSPSSMFHVP 61
           YW  SS +H+P
Sbjct: 243 YWMSSSQYHMP 253


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +2

Query: 101 PERVVRKGILVTNHNAALFI 160
           PE  +   +  T HNA  ++
Sbjct: 301 PEETIISSVFTTRHNATCYL 320


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/20 (30%), Positives = 10/20 (50%)
 Frame = +2

Query: 101 PERVVRKGILVTNHNAALFI 160
           PE  +   +  T HNA  ++
Sbjct: 7   PEETIISSVFTTRHNATCYL 26


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +1

Query: 142 QRSVVYLHATTVG 180
           Q +VVY H T +G
Sbjct: 59  QATVVYFHVTVMG 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.312    0.126    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,267
Number of Sequences: 438
Number of extensions: 1873
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.5 bits)

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