BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00344 (365 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 24 0.49 AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso... 22 2.0 EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 21 3.4 EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 21 3.4 AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 4.6 AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. 21 4.6 DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chlor... 20 8.0 >AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. Length = 401 Score = 24.2 bits (50), Expect = 0.49 Identities = 13/44 (29%), Positives = 18/44 (40%) Frame = +1 Query: 16 RGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQR 147 R S SS D++H R N GE S D S + ++ Sbjct: 220 RSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKK 263 >AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor protein. Length = 1770 Score = 22.2 bits (45), Expect = 2.0 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 290 EDRETFCGAADLIFEEL 240 +DRET AA+ I EEL Sbjct: 846 KDRETIISAAEKIAEEL 862 >EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. Length = 686 Score = 21.4 bits (43), Expect = 3.4 Identities = 6/11 (54%), Positives = 8/11 (72%) Frame = -3 Query: 93 YWSPSSMFHVP 61 YW SS +H+P Sbjct: 243 YWMSSSQYHMP 253 >EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. Length = 686 Score = 21.4 bits (43), Expect = 3.4 Identities = 6/11 (54%), Positives = 8/11 (72%) Frame = -3 Query: 93 YWSPSSMFHVP 61 YW SS +H+P Sbjct: 243 YWMSSSQYHMP 253 >AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein protein. Length = 1124 Score = 21.0 bits (42), Expect = 4.6 Identities = 6/20 (30%), Positives = 10/20 (50%) Frame = +2 Query: 101 PERVVRKGILVTNHNAALFI 160 PE + + T HNA ++ Sbjct: 301 PEETIISSVFTTRHNATCYL 320 >AB050744-1|BAB17753.1| 238|Apis mellifera period protein protein. Length = 238 Score = 21.0 bits (42), Expect = 4.6 Identities = 6/20 (30%), Positives = 10/20 (50%) Frame = +2 Query: 101 PERVVRKGILVTNHNAALFI 160 PE + + T HNA ++ Sbjct: 7 PEETIISSVFTTRHNATCYL 26 >DQ667187-1|ABG75739.1| 428|Apis mellifera histamine-gated chloride channel protein. Length = 428 Score = 20.2 bits (40), Expect = 8.0 Identities = 7/13 (53%), Positives = 9/13 (69%) Frame = +1 Query: 142 QRSVVYLHATTVG 180 Q +VVY H T +G Sbjct: 59 QATVVYFHVTVMG 71 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.312 0.126 0.362 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 94,267 Number of Sequences: 438 Number of extensions: 1873 Number of successful extensions: 9 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 9 length of database: 146,343 effective HSP length: 51 effective length of database: 124,005 effective search space used: 8680350 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 39 (20.5 bits)
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