Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00344
(365 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g80000.2 68414.m09359 expressed protein identical to unknown ... 30 0.54
At1g80000.1 68414.m09358 expressed protein identical to unknown ... 30 0.54
At1g67570.1 68414.m07698 expressed protein 27 2.9
At5g07120.1 68418.m00812 phox (PX) domain-containing protein sim... 27 3.8
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 3.8
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 3.8
At4g02720.1 68417.m00368 expressed protein temporary automated f... 27 5.0
At1g71980.1 68414.m08320 protease-associated zinc finger (C3HC4-... 27 5.0
At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containi... 27 5.0
At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase I... 26 6.7
At3g47270.1 68416.m05135 hypothetical protein similar to At2g049... 26 6.7
At2g25730.1 68415.m03084 expressed protein 26 6.7
At4g34280.1 68417.m04873 transducin family protein / WD-40 repea... 26 8.8
At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia l... 26 8.8
>At1g80000.2 68414.m09359 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 28 SDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLHA 168
SD S ELNR + RRR ++ E E D H R+ + +H+
Sbjct: 9 SDYESDPDELNRSLATRRR-EASDDDEDDEEAD-DHDKLRAAIQIHS 53
>At1g80000.1 68414.m09358 expressed protein identical to unknown
protein GB:AAD55481 [Arabidopsis thaliana]
Length = 605
Score = 29.9 bits (64), Expect = 0.54
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 28 SDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLHA 168
SD S ELNR + RRR ++ E E D H R+ + +H+
Sbjct: 9 SDYESDPDELNRSLATRRR-EASDDDEDDEEAD-DHDKLRAAIQIHS 53
>At1g67570.1 68414.m07698 expressed protein
Length = 456
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/38 (39%), Positives = 17/38 (44%)
Frame = +1
Query: 67 MKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLHATTVG 180
M H R PVTN S S H+ Q V+YL G
Sbjct: 382 MDHYMRMPVTNQFPSYMSMSSYHKRQAFVLYLQMNPGG 419
>At5g07120.1 68418.m00812 phox (PX) domain-containing protein
similar to SP|O60749 Sorting nexin 2 {Homo sapiens};
contains Pfam profile PF00787: PX domain
Length = 572
Score = 27.1 bits (57), Expect = 3.8
Identities = 12/49 (24%), Positives = 25/49 (51%)
Frame = +1
Query: 13 ERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVY 159
E S + SSK+E+ + P+T S + + +S+++S S ++
Sbjct: 5 ENDEESHLHSSKEEMEKLFLREDGDPLTKSNVNGDKSNSNYRSAMSTLF 53
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 22 SSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
S I + +KH R TP +NS GDS H S+R+
Sbjct: 266 SGGPIALGAPSIQAALKHPR-TPPSNSAVDYPSGDSDHVSKRT 307
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.1 bits (57), Expect = 3.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 22 SSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
S I + +KH R TP +NS GDS H S+R+
Sbjct: 266 SGGPIALGAPSIQAALKHPR-TPPSNSAVDYPSGDSDHVSKRT 307
>At4g02720.1 68417.m00368 expressed protein temporary automated
functional assignment
Length = 422
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 1 GTSDERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQ 144
G SD S +RS K++ ++ + +RR + +S +EG S +
Sbjct: 100 GKSDSESESDGLRSRKRK-SKSSRSKRRRKRSYDSDSESEGSESDSEE 146
Score = 26.2 bits (55), Expect = 6.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +1
Query: 16 RGSSSDIRSSK--QELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRS 150
R SSS + S+ + + HRR+T ++S ESS E + S S
Sbjct: 153 RKSSSKRKKSRSSRSFRKKRSHRRKTKYSDSDESSDEDSKAEISASS 199
>At1g71980.1 68414.m08320 protease-associated zinc finger
(C3HC4-type RING finger) family protein identical to
ReMembR-H2 protein JR702 [Arabidopsis thaliana]
gi|6942149|gb|AAF32326; contains Pfam domain, PF02225:
protease-associated (PA) domain and Pfam domain,
PF00097: Zinc finger, C3HC4 type (RING finger);
identical to cDNA ReMembR-H2 protein JR702 mRNA, partial
cds GI:6942148
Length = 448
Score = 26.6 bits (56), Expect = 5.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 85 TPVTNSGESSTEGDSSHQSQRSVVYLHATTVGDIP 189
TP+ +S SS S H S RS L ++G +P
Sbjct: 290 TPLLSSAASSFTSSSLHSSVRSSALLIGPSLGSLP 324
>At1g33400.1 68414.m04135 tetratricopeptide repeat (TPR)-containing
protein contains Pfam profile PF00515 TPR Domain
Length = 798
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Frame = +1
Query: 19 GSSSDIRSSKQELNRDMKHRRRT-PVTNSGES--STEGDSSHQSQ--RSVVYLHATTVGD 183
GS DI +S E+N+ H RR + NSG + S D S R+ ++++ + D
Sbjct: 637 GSRCDIENSHAEVNKAWNHMRRVEELMNSGRANYSVLSDCSRSIAVLRTFLHMYNKDIAD 696
Query: 184 IPD 192
D
Sbjct: 697 AED 699
>At5g57160.1 68418.m07140 DNA ligase IV identical to DNA ligase IV
GI:9651815 from [Arabidopsis thaliana]; identical to cDNA
DNA ligase IV, GI:9651814
Length = 1219
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +1
Query: 37 RSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQ 138
RSS L R + R + P SG+ + E D+S +
Sbjct: 966 RSSTNSLQRVQRRRGKQPSKISGDETEESDASEE 999
>At3g47270.1 68416.m05135 hypothetical protein similar to At2g04970,
At2g15200, At1g32830, At2g14140, At3g30450, At4g03990,
At5g34895, At2g02200
Length = 671
Score = 26.2 bits (55), Expect = 6.7
Identities = 14/59 (23%), Positives = 28/59 (47%)
Frame = +1
Query: 10 DERGSSSDIRSSKQELNRDMKHRRRTPVTNSGESSTEGDSSHQSQRSVVYLHATTVGDI 186
+ + +I +E +D + +TP++ E T+G SS Q+ + V L + +I
Sbjct: 519 ESQPQKEEITEVPRETKKDDEDVNQTPLSTQEEEITQGQSSLQTPLTPVMLSKEVMEEI 577
>At2g25730.1 68415.m03084 expressed protein
Length = 2464
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -1
Query: 311 NASGPWGEDRETFCGAAD--LIFEELIDETSSLERLRD 204
N + PWG D ET AD L+ + LID + ER+++
Sbjct: 81 NPTSPWGFDSETLSLRADFLLMVQVLIDRVT--ERIKE 116
>At4g34280.1 68417.m04873 transducin family protein / WD-40 repeat
family protein similar to TUPA (GI:11066216) [Emericella
nidulans]; similar to damage-specific DNA binding
protein 2, Homo sapiens ,PIR2:I38909; contains Pfam
PF00400: WD domain, G-beta repeat (3 copies,1
weak)|19797453|gb|AU229277.1|AU229277
Length = 783
Score = 25.8 bits (54), Expect = 8.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = -2
Query: 358 LISLVCVHNGRRIDAIMLRGHGAKIEKLFV 269
+I + C GRR+ + L G+G+ ++V
Sbjct: 697 VIRVCCAQTGRRLRDVTLEGNGSDFSMMYV 726
>At4g20320.1 68417.m02967 CTP synthase, putative / UTP--ammonia
ligase, putative similar to SP|P17812 CTP synthase (EC
6.3.4.2) (UTP--ammonia ligase) {Homo sapiens}; contains
Pfam profile PF00117: glutamine amidotransferase class-I
Length = 563
Score = 25.8 bits (54), Expect = 8.8
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = -1
Query: 212 LRDIRPGSGISPTVVACR*T 153
+RD+R G G+SP ++ACR T
Sbjct: 201 VRDLR-GLGLSPNILACRST 219
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.312 0.126 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,331,073
Number of Sequences: 28952
Number of extensions: 131674
Number of successful extensions: 344
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 477939072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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