Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00343
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei...    26   4.0  
SPBC651.03c |gyp10||GTPase activating protein Gyp10|Schizosaccha...    25   7.0  

>SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein
           Mcp6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +3

Query: 240 QKRLWSSEMMTNKTTSRKKEITRP*TAP*RRWQLNYGYDYQP 365
           +KRL +    T +  S+ +EI R    P   + LN  + YQP
Sbjct: 274 RKRLENDSSTTKQRLSKLEEIIRNRAPPSYSFSLNCSHTYQP 315


>SPBC651.03c |gyp10||GTPase activating protein
           Gyp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 373

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 284 FKKERDY--PTLNSTVEEMATKLRI*LSTSPTLY 379
           F + RD+  PTL+ TV+++   L +  +  PTLY
Sbjct: 145 FYRLRDFMLPTLDGTVKQLQLILAVIKARDPTLY 178


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,504
Number of Sequences: 5004
Number of extensions: 34455
Number of successful extensions: 61
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)