Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00343
         (642 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0008 + 12303536-12303893,12303910-12304176,12304635-123049...    28   7.2  
04_03_0869 + 20421368-20421548,20421781-20422664,20422747-204229...    28   7.2  
02_05_1121 + 34262019-34262040,34262144-34262211,34262909-342630...    27   9.6  

>07_03_0008 +
           12303536-12303893,12303910-12304176,12304635-12304951,
           12304975-12305819,12305859-12306069
          Length = 665

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = +1

Query: 304 PDPKQHRRGDGN*ITDMIIN-LPDIIPREETTIK 402
           P P +H  G    +TD +I+ + + + REET I+
Sbjct: 126 PKPTEHEEGQSKTLTDSLIDFMVNFLEREETRIR 159


>04_03_0869 +
           20421368-20421548,20421781-20422664,20422747-20422905,
           20423008-20423252,20423360-20423453,20423580-20423768
          Length = 583

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +3

Query: 336 QLNYGYDYQPPRHYTERRDYYQNQQV*FLRY 428
           +L  GY +QPP+H+     YY+     F +Y
Sbjct: 45  KLRTGYHFQPPKHWINGPMYYKGLYHLFYQY 75


>02_05_1121 +
           34262019-34262040,34262144-34262211,34262909-34263067,
           34263146-34263313,34264125-34264278,34264845-34264924,
           34265567-34265839,34265956-34266099,34266750-34266884,
           34266994-34267092,34267530-34267586,34267673-34267877,
           34268159-34268277,34268779-34268877,34268964-34269203
          Length = 673

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/14 (78%), Positives = 13/14 (92%)
 Frame = -1

Query: 420 GIRPVGFDSSLFSR 379
           G+RPVGFD+SL SR
Sbjct: 278 GVRPVGFDASLNSR 291


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,554,711
Number of Sequences: 37544
Number of extensions: 219052
Number of successful extensions: 398
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)