Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00343
         (642 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47358-6|CAA87436.1|  356|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AJ005864-1|CAA06741.1|  356|Caenorhabditis elegans Sqv-8 protein...    29   2.8  
AF043699-1|AAB97563.2|  202|Caenorhabditis elegans Hypothetical ...    28   4.9  

>Z47358-6|CAA87436.1|  356|Caenorhabditis elegans Hypothetical
           protein ZK1307.5 protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 284 FKKERDYPTLNSTVEEMATKLRI*LSTSPTLYR 382
           F+KER+   LN  VEE+ T++R  LS  P + R
Sbjct: 62  FEKERNLVRLNGKVEEIDTQIRDHLSLLPRVNR 94


>AJ005864-1|CAA06741.1|  356|Caenorhabditis elegans Sqv-8 protein
           protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +2

Query: 284 FKKERDYPTLNSTVEEMATKLRI*LSTSPTLYR 382
           F+KER+   LN  VEE+ T++R  LS  P + R
Sbjct: 62  FEKERNLVRLNGKVEEIDTQIRDHLSLLPRVNR 94


>AF043699-1|AAB97563.2|  202|Caenorhabditis elegans Hypothetical
           protein K02F2.5 protein.
          Length = 202

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 24/90 (26%), Positives = 42/90 (46%)
 Frame = +1

Query: 157 TRSKMNKFTLVLGFLLLIAVVNARHYGDRRDSGVLR**RTKRLQERKRLPDPKQHRRGDG 336
           T S +   +L+   LL +A+V A      + + V +  ++   + +  +P PK  RRG  
Sbjct: 2   TMSSIVTQSLLAVALLSVAMVEAAPLESTKGATV-KSTKSSSSKTKGYVPTPKALRRGKR 60

Query: 337 N*ITDMIINLPDIIPREETTIKTNRSDSSD 426
           N I D I +   ++  EE  ++    D SD
Sbjct: 61  NVILDEIPDDSSVLGTEEDVLREQLFDLSD 90


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,774,373
Number of Sequences: 27780
Number of extensions: 197375
Number of successful extensions: 391
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1427403330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)