Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00342
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1635.01 |||voltage-dependent anion-selective channel|Schizos...    42   9e-05
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr...    30   0.39 
SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit Rsm2...    28   1.6  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    28   1.6  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   2.1  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     27   2.7  
SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual     25   8.4  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   8.4  
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    25   8.4  

>SPAC1635.01 |||voltage-dependent anion-selective
           channel|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 282

 Score = 41.9 bits (94), Expect = 9e-05
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +1

Query: 256 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 435
           F  K  GLT ++ W T N L + + + ++ A GL + +  TF+P T  KT  L     + 
Sbjct: 60  FNDKANGLTISQGWTTANVLESKVGLSEQFAPGLHLNVNTTFSPATAAKTAILNLEHQHP 119

Query: 436 TVAVNTNLD 462
            +  + +++
Sbjct: 120 LIHTHASVN 128



 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
 Frame = +2

Query: 77  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQES-GKVFGSLSS 253
           MAPP YA + K  ND+  + +  G   L ++T + +GV F   ++ NQ++ G + G L +
Sbjct: 1   MAPPAYAAINKLCNDLLQRDFPVGATLLSVRTTAPNGVVF--NVSGNQDAKGVISGKLET 58

Query: 254 NLQ*K 268
           +   K
Sbjct: 59  SFNDK 63



 Score = 39.5 bits (88), Expect = 5e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 510 QGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKD-FGGSIYQKVSDKLDCG 686
           +G+LAG    +D QK   S     +GY +   ++     N    F  S Y +VS  ++ G
Sbjct: 143 EGFLAGAEFGYDVQKGNVSNYAATIGYLASPLSVALQASNNLSVFRASYYHRVSSDVEAG 202

Query: 687 VSMKWTAGS 713
            ++ W A S
Sbjct: 203 GNVTWDAAS 211


>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 905

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 24/102 (23%), Positives = 39/102 (38%), Gaps = 1/102 (0%)
 Frame = +1

Query: 247 FLQFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSF 426
           FLQ A K YG+ F   W   + +   I +++  A G  +    +  P  G   G +    
Sbjct: 153 FLQSAAKKYGIQF---WGPGSGIIHQIVLENYAAPGGMMLGTDSHTPNAG-GLGMIAIGV 208

Query: 427 TN-DTVAVNTNLDLDLAGPVVDVAAVLNSRVGWLVYTPSLIH 549
              D V   TN   +L  P +    +  +  GW      ++H
Sbjct: 209 GGADAVDAMTNTPWELKAPKIIGVNLTGAMSGWTTPKDLILH 250


>SPBC16A3.04 |rsm25||mitochondrial ribosomal protein subunit
           Rsm25|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 531 HTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSD 671
           H Q     A F+K++  LGY+    AL++  DN   +  +   K +D
Sbjct: 164 HDQAQALGAVFTKSDLELGYEMDQNALNSWFDNASQYAEANRTKFTD 210


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 30/90 (33%), Positives = 41/90 (45%), Gaps = 8/90 (8%)
 Frame = +2

Query: 14  APICVEFSVK*YQFVNL*NTDMAPPY------YADLGKKANDVFSKGYHFGVFKLDLKTK 175
           APIC EF+   Y F  L  T     +      YA  G   N   S  YH G    D+  +
Sbjct: 288 APICFEFAK--YGFCEL-GTSCKNQHILQCTDYAMFGSCNNPQCSL-YH-GAVSADVPEQ 342

Query: 176 SESGVEFTSGITSNQESGKVFG--SLSSNL 259
           +E+ +  T+G  + ++SG   G  SL SNL
Sbjct: 343 TEAPISKTAGSINPEDSGSEIGSNSLESNL 372


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +1

Query: 361  VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDL 465
            V++E    P+  T +G+++T+F  DT+ +   L++
Sbjct: 3557 VSIEPLLKPEFFTGSGEVQTTFAKDTITITLPLNI 3591


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/27 (48%), Positives = 14/27 (51%)
 Frame = -2

Query: 574 LFLENFAFCVSNWVCTPASQPWSLVLL 494
           LF + FAF   N VCT     W LV L
Sbjct: 721 LFAQTFAFVTFNKVCTSQYFMWYLVFL 747


>SPCC777.06c |||hydrolase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +3

Query: 219 RKAERFLAAFPPICSERLWLDFHREVEHRQYI 314
           ++AE F+A+   + S  L+  F  +VEH + +
Sbjct: 247 KQAEEFIASLEHVPSRVLYTGFSHKVEHNETV 278


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 220 LVGGDPAGEFNTRLALGLQVEFENTKVIALAEDIIG 113
           L GG   G+F++ L  G++  ++ T+    AE +IG
Sbjct: 72  LAGGRGKGQFDSGLRGGVRPVYDATEARMFAEQMIG 107


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 257 NWRKGCQKPFRFPGWR*SRW*IQHQTRSWSSG 162
           NW +G + P    G R   W    +T +W+SG
Sbjct: 811 NWAQGARTPAVANGSRTPAWNTGSRTPAWNSG 842


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,911,900
Number of Sequences: 5004
Number of extensions: 59855
Number of successful extensions: 145
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)