Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00342
         (728 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055...    39   0.004
12_02_0156 - 14532000-14532098,14532669-14534330,14534445-145346...    29   5.0  
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182...    29   5.0  
03_05_0900 + 28627221-28629536                                         29   5.0  
01_06_1545 + 38144624-38145301                                         29   5.0  
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306...    28   8.7  
05_03_0373 - 13194723-13195847,13196219-13196809                       28   8.7  

>01_05_0521 -
           22904656-22904962,22905132-22905340,22905432-22905521,
           22905624-22905734,22906401-22906468,22906611-22906653
          Length = 275

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 25/66 (37%), Positives = 33/66 (50%)
 Frame = +2

Query: 77  MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSN 256
           MAP  Y D+GKK  D+  + Y     K  L T +  GV  T+  T   ES  VFG L + 
Sbjct: 1   MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57

Query: 257 LQ*KTM 274
           L+ K +
Sbjct: 58  LKNKKL 63



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 525 GVHTQFDTQKAKFSKNNFALGYQSGDF--ALHTNVDNGKDFGGSIYQKV 665
           GV   FDT  + F+K N AL   + D   +LH N ++G     S Y  V
Sbjct: 142 GVDVAFDTATSNFTKYNAALSLTNSDLIASLHLN-NHGDTLIASYYHLV 189


>12_02_0156 -
           14532000-14532098,14532669-14534330,14534445-14534660,
           14534730-14534907,14535065-14535276
          Length = 788

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/90 (27%), Positives = 35/90 (38%)
 Frame = +1

Query: 235 FWQPFLQFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKL 414
           +W  FL FA  ++GLTF         +    T        +K  L G   P       +L
Sbjct: 144 YWAGFLYFAGVNFGLTFIAAM---LCVVFAPTAAGPGIPEIKAYLNGVDTPNM-FGAPQL 199

Query: 415 KTSFTNDTVAVNTNLDLDLAGPVVDVAAVL 504
                    AV++ LDL   GP+V + A L
Sbjct: 200 IVKIIGSICAVSSGLDLGKEGPLVHIGACL 229


>05_06_0213 +
           26414613-26414695,26416907-26417077,26417983-26418219,
           26418543-26418572,26419248-26419282,26421680-26421747,
           26423067-26423126,26423310-26423399,26423487-26423695,
           26424083-26424383
          Length = 427

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
 Frame = +3

Query: 525 GVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDN-GKDFGGSIYQKVSDKLDCGVSM 695
           G    FDT    F+K N  L + + D      ++N G     S Y KVS     G  +
Sbjct: 296 GTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVSKTSAVGAEL 353


>03_05_0900 + 28627221-28629536
          Length = 771

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/25 (60%), Positives = 15/25 (60%)
 Frame = +3

Query: 186 VLNSPAGSPPTRKAERFLAAFPPIC 260
           VL  PA  PPT K   FLAA PP C
Sbjct: 63  VLRHPA-LPPTSKLSFFLAATPPSC 86


>01_06_1545 + 38144624-38145301
          Length = 225

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
 Frame = -1

Query: 521 QPTLEFSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSR 366
           QP L  +TAA+S++ P  SRSK+   +   TVS      E  N    V+VP   A  P+R
Sbjct: 29  QPQLA-ATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPAR 87

Query: 365 VTLRPA 348
           V +  A
Sbjct: 88  VVVSDA 93


>09_02_0022 +
           3065644-3065953,3066048-3067162,3067261-3067437,
           3067535-3067648,3068614-3068718,3068930-3069064,
           3069148-3069203,3069277-3069382,3069515-3069631,
           3069705-3069831,3069915-3070141,3070164-3070727
          Length = 1050

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 425 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 297
           ++V +  VL +  C   + SR+ L PA+ LSW   S    LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649


>05_03_0373 - 13194723-13195847,13196219-13196809
          Length = 571

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 373 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 471
           GT+  Q  T TGK+  +FT +    +  LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,354,184
Number of Sequences: 37544
Number of extensions: 405813
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 992
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)