Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00342
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)                     92   4e-19
SB_59295| Best HMM Match : SET (HMM E-Value=0)                         30   2.2  
SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)                29   3.9  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   29   5.1  
SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_10961| Best HMM Match : Porin_3 (HMM E-Value=0)
          Length = 379

 Score = 92.3 bits (219), Expect = 4e-19
 Identities = 39/90 (43%), Positives = 61/90 (67%)
 Frame = +1

Query: 253 QFAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTN 432
           ++   DYG++ +EKW TDN L+++IT++D+IA GLK+  + TFAP TG K+ K+KT++  
Sbjct: 157 KYKYSDYGISLSEKWTTDNVLSSEITVEDQIAKGLKLQFDTTFAPNTGKKSAKIKTAYKQ 216

Query: 433 DTVAVNTNLDLDLAGPVVDVAAVLNSRVGW 522
           D +    ++D D AGP V  +AV+    GW
Sbjct: 217 DYLHATGDVDFDFAGPTVQGSAVVGYE-GW 245



 Score = 75.8 bits (178), Expect = 3e-14
 Identities = 30/73 (41%), Positives = 46/73 (63%)
 Frame = +3

Query: 510 QGWLAGVHTQFDTQKAKFSKNNFALGYQSGDFALHTNVDNGKDFGGSIYQKVSDKLDCGV 689
           +GW AG    +DT K+K   NNF+LGY++ DF +H+ V++   F GSIY ++S  L+   
Sbjct: 243 EGWHAGYQVAYDTSKSKLIANNFSLGYRAKDFQIHSAVNDASKFTGSIYHQISKNLEVAA 302

Query: 690 SMKWTAGSADTLF 728
            + W  GS++T F
Sbjct: 303 QLNWATGSSNTSF 315



 Score = 70.1 bits (164), Expect = 2e-12
 Identities = 32/57 (56%), Positives = 42/57 (73%)
 Frame = +2

Query: 83  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSS 253
           P  Y DLGK+A DVF KGY FG  K+DLKT +++GVEF +  +S  ++GKVFGSL +
Sbjct: 100 PVKYEDLGKEARDVFGKGYGFGCVKVDLKTTTKNGVEFKTAGSSMNDTGKVFGSLET 156


>SB_59295| Best HMM Match : SET (HMM E-Value=0)
          Length = 1230

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +1

Query: 298 NTD-NTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAV 447
           +TD N L +D + +DK     K   E T    +   TGKL+T +  DT+ +
Sbjct: 809 STDTNLLCSDASPEDKTTKEAKSVSETTPDTSSEESTGKLETKYNADTIDI 859


>SB_33995| Best HMM Match : Cadherin (HMM E-Value=3e-39)
          Length = 632

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 253 GGKAAKNLSAFLVGGDPAGEFN 188
           GG A   L  +LVGGDP  +FN
Sbjct: 389 GGGAGGELRYYLVGGDPQSQFN 410


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +1

Query: 421 SFTNDTVAVNTNLDLDLAGPVVDVAAVLNSRV 516
           ++TN   A++T     +AGPVV V+A LN  V
Sbjct: 213 NYTNPICALHTVTKTSVAGPVVTVSAPLNDPV 244


>SB_56441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1717

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 9/22 (40%), Positives = 17/22 (77%)
 Frame = +3

Query: 600 DFALHTNVDNGKDFGGSIYQKV 665
           ++ +H ++  G+D+GGS YQ+V
Sbjct: 394 EYGIHLSLTVGRDYGGSYYQQV 415


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
 Frame = +1

Query: 304  DNTLATDITI--QDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNT 453
            ++TLA +ITI  +  +A G  +  E TFAP+T TK  +   +    T    T
Sbjct: 1724 ESTLAPEITIASESTVAPGTTMAPETTFAPET-TKAPETTLALETTTAPETT 1774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,863,971
Number of Sequences: 59808
Number of extensions: 466412
Number of successful extensions: 1257
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1254
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)