Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00342
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.2  
U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.              23   2.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   2.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.0  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.0  

>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -3

Query: 282 SQAIVFHCKLEERLPKTFPLSWLEVIPLVNST 187
           S++ + H + E RL    P  WL ++P ++ +
Sbjct: 366 SESFMKHYENEMRLRNGCPADWLWIVPPISGS 397


>U66709-1|AAB07515.1|  182|Apis mellifera ankyrin protein.
          Length = 182

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +1

Query: 373 GTFAPQTGTKTGKLKTSFTNDTVAVNTNL 459
           GT   Q    TG    +F NDTV+  T +
Sbjct: 86  GTSESQWEDVTGSTPLTFVNDTVSFTTTV 114


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 152 FKLDLKTKSESGVEFTSGITSNQ 220
           F+LDL+ + E+G + +S IT+ +
Sbjct: 174 FQLDLQLQDEAGGDISSFITNGE 196


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 15/61 (24%), Positives = 29/61 (47%)
 Frame = +1

Query: 361 VTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAAVLNSRVGWLVYTPS 540
           V  +G F  +   KT  L     ++  AV+  ++      +VD++ ++N R    +YT S
Sbjct: 476 VLKKGNFTIEILNKT-VLAVVRQSEEEAVSLLINFSKNNTIVDISKLVNKRNNAKIYTSS 534

Query: 541 L 543
           +
Sbjct: 535 V 535


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 309 IVCVPLLCESQAIVFHCKLEERLPKTFPLSWLE 211
           IV V L   S A +   K+E  +  TF   WL+
Sbjct: 60  IVRVNLFVRSIATISDIKMEYSVQLTFREQWLD 92


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
          beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 28 GILCEIIPICEFI 66
          GI CEI   CEF+
Sbjct: 59 GIKCEIYAKCEFL 71


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,902
Number of Sequences: 438
Number of extensions: 4072
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)