Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00342
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin ...    36   0.028
At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34...    33   0.26 
At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34...    32   0.45 
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   7.3  
At4g25920.1 68417.m03727 expressed protein contains Pfam profile...    27   9.6  
At3g09450.1 68416.m01123 hypothetical protein                          27   9.6  

>At5g57490.1 68418.m07184 porin, putative similar to 36kDA porin II
           [Solanum tuberosum] GI:515360; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 274

 Score = 35.9 bits (79), Expect = 0.028
 Identities = 21/58 (36%), Positives = 32/58 (55%)
 Frame = +2

Query: 80  APPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSS 253
           +P  +AD+GKKA D+ +K Y F   K  L   S +G EF +  T  ++    FG +S+
Sbjct: 4   SPAPFADIGKKAKDLLNKDYIFD-HKFTLTMLSATGTEFVA--TGLKKDDFFFGDIST 58


>At5g67500.1 68418.m08512 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 276

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 83  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTS 202
           P  + D+GKKA D+ ++ Y+    K  + T S SGV  TS
Sbjct: 5   PGLFTDIGKKAKDLLTRDYNSDQ-KFSISTYSASGVALTS 43


>At3g49920.1 68416.m05458 porin, putative similar to SP|P42055 34
           kDa outer mitochondrial membrane protein porin
           (Voltage-dependent anion-selective channel protein)
           (VDAC) {Solanum tuberosum}; contains Pfam profile
           PF01459: Eukaryotic porin
          Length = 226

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = +2

Query: 83  PPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSN 217
           P  +AD+GK A D+ ++ Y     K  + T S SGV  TS    N
Sbjct: 5   PGLFADIGKYAKDLLTRDYSTDQ-KFSISTNSVSGVALTSTALKN 48


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +2

Query: 71  TDMAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGK 232
           T ++ P  ++ G+ A  +  K  +FG   LDL  K   +SG+  +S ITS   SGK
Sbjct: 268 TSLSAPAISNGGRDAASL--KTTNFGSSALDLVKKKLHDSGMPVSSTITSEANSGK 321


>At4g25920.1 68417.m03727 expressed protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 390

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 86  PYYADLGKKANDVFSKGYHFGVFKLDLKT 172
           P  +  G K N ++  GY+FGV+ L  KT
Sbjct: 330 PASSSPGLKPNCIYFVGYNFGVYDLTTKT 358


>At3g09450.1 68416.m01123 hypothetical protein
          Length = 775

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = -1

Query: 566 GELCFLCIKLGVYTSQPTLEFSTAATSTTGPAKSRSKLVFTATVSLVNEVFNFPV 402
           GE+   C+ +   T Q T+  +  +    GPA   + LV    V+L + +  FPV
Sbjct: 61  GEVLKCCLDVSYATFQ-TIAIALVSVLVVGPASLGNGLVAPVAVALASFIVAFPV 114


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,957
Number of Sequences: 28952
Number of extensions: 325100
Number of successful extensions: 833
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)