Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00341
         (787 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subu...    23   3.7  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   3.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    22   4.8  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   6.4  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    22   6.4  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    22   6.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    22   6.4  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   6.4  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    21   8.4  

>S78567-1|AAB34900.1|  141|Tribolium castaneum GABA receptor subunit
           protein.
          Length = 141

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 650 YIVIQLILVIDFAHSWAEIWVLNTKRQNRRMVCSTTDLMLTCLLS 784
           YI   LI++I    SW   W+       R  +  TT L +T L+S
Sbjct: 75  YIPSGLIVII----SWVSFWLNRNATPARVALGVTTVLTMTTLMS 115


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 417 VGYLAVYRITFATCLFFLLMALIMIGVKS 503
           VG  + Y +TF     FL++ L + G+ S
Sbjct: 280 VGNASGYTVTFLCLYLFLIITLTIYGLLS 308


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 426 LAVYRITFATCLFFLLMAL 482
           L+  R+   TCL FLL+AL
Sbjct: 59  LSPMRLIVQTCLDFLLLAL 77


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -1

Query: 598 SWDEECSDNATNNQ 557
           SW+  CS N+T++Q
Sbjct: 178 SWNNPCSINSTSSQ 191


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/61 (18%), Positives = 29/61 (47%)
 Frame = +3

Query: 390 NFKVDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLLV 569
           N K+D +    ++    +     +++ ++  +++GV   K    E+  ++    +Y+LL 
Sbjct: 92  NLKLDRENNSSFVVANVLFQLIHVYYTVVFTLLLGVDFVKEYAFEYIQLYSQFILYFLLF 151

Query: 570 A 572
           A
Sbjct: 152 A 152


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/61 (18%), Positives = 29/61 (47%)
 Frame = +3

Query: 390 NFKVDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLLV 569
           N K+D +    ++    +     +++ ++  +++GV   K    E+  ++    +Y+LL 
Sbjct: 92  NLKLDRENNSSFVVANVLFQLIHVYYTVVFTLLLGVDFVKEYAFEYIQLYSQFILYFLLF 151

Query: 570 A 572
           A
Sbjct: 152 A 152


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/61 (18%), Positives = 29/61 (47%)
 Frame = +3

Query: 390 NFKVDCDEAVGYLAVYRITFATCLFFLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLLV 569
           N K+D +    ++    +     +++ ++  +++GV   K    E+  ++    +Y+LL 
Sbjct: 412 NLKLDRENNSSFVVANVLFQLIHVYYTVVFTLLLGVDFVKEYAFEYIQLYSQFILYFLLF 471

Query: 570 A 572
           A
Sbjct: 472 A 472


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -3

Query: 467 KEETCCKCNSINSQISNRF 411
           KEE   KC    SQ+SN F
Sbjct: 263 KEELARKCGITVSQVSNWF 281


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -1

Query: 760 ISSAAYHPSILSL 722
           ++ + YHPSI+SL
Sbjct: 856 VNGSEYHPSIVSL 868


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,720
Number of Sequences: 336
Number of extensions: 3908
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)