Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00341
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1A10.07c |||sphingolipid biosynthesis protein|Schizosacchar...    40   4e-04
SPAPJ695.01c |||S. pombe specific UPF0321 family protein 3|Schiz...    33   0.061
SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|...    29   1.00 
SPCC4G3.05c |mus81||Holliday junction resolvase subunit Mus81|Sc...    27   2.3  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    27   3.0  
SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   7.0  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   7.0  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   7.0  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   7.0  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   7.0  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    25   9.3  

>SPAPB1A10.07c |||sphingolipid biosynthesis
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/60 (31%), Positives = 29/60 (48%)
 Frame = +2

Query: 524 IQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILVIDFAHSWAE 703
           IQNG W  K +L                +    +  ++G   +IV  L+L++DFAH+WAE
Sbjct: 125 IQNGLWPFKIVLWFVLGIFSFFIPTKFLSFWGNIISVMGSALFIVYGLMLLVDFAHTWAE 184


>SPAPJ695.01c |||S. pombe specific UPF0321 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 32.7 bits (71), Expect = 0.061
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -1

Query: 703 FSPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILN 524
           FS G  +I   N L NNV E +N +  + C+     +  +C    TN+    D P+T  +
Sbjct: 49  FSTGDIRIGAYNYLVNNVTEINNDTDAYLCQLLTGQYTTDCYIFDTNSD---DKPETFNS 105

Query: 523 SSSWILEDLTP 491
           S   +  DL P
Sbjct: 106 SIHLLNSDLDP 116


>SPBC30D10.03c |||IMP 5'-nucleotidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 405

 Score = 28.7 bits (61), Expect = 1.00
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 550 FDGPKTILNSSSWILEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQS-TLKFPG 383
           FDG  T+      +L D  P+I   I    R +  +IL  A YP+ + Q  T +F G
Sbjct: 146 FDGDVTLYEDGQPLLPD-NPVISRLIQLLSRGIYVIILTAAGYPSRTGQEYTDRFSG 201


>SPCC4G3.05c |mus81||Holliday junction resolvase subunit
           Mus81|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 608

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 19/54 (35%), Positives = 31/54 (57%)
 Frame = +3

Query: 465 FLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLLVALSEHSSSQEVNLLRHGWC 626
           F+ M + + G+ +SK  E++ K    P+ ++ L  A  + SSSQE NLL +  C
Sbjct: 535 FIRMLMTIKGISASKAIEIQKKY---PTFMH-LFEAYEKSSSSQERNLLLNKTC 584


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
 Frame = -3

Query: 293 AHNSYQH--QH*CIHRREEVELVQDGHAEQHSEQAV--LPQQHA 174
           A +S QH  +  CIH    +   QDG  EQH    V  LP  HA
Sbjct: 643 ATDSSQHVVERPCIHSLRGIHGQQDGGLEQHDGDHVNMLPDTHA 686


>SPAP27G11.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 689

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 538 LGHQIFIGYWWHYRSILHPRRSICFDMDGV 627
           L HQ F  +W+  R +++P R +C+ +  V
Sbjct: 544 LYHQSFSSHWFISRLLINPIRMLCWHITDV 573


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +3

Query: 216 SMSILHQFHLLPSMYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVT 374
           ++   H F +    Y+L L LV ++   TL P     L  +PF      S +T
Sbjct: 59  TLHFFHHFTIACYHYSLCLSLVALLLFYTLYPFQSITLPLMPFLEKTESSILT 111


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 204 TMLFSMSILHQFHLLPSMYALMLVLVTIVCCI 299
           T L  ++ +  F ++ ++Y   L+L+TIVC +
Sbjct: 325 TQLSKVTNIIFFRVIGAIYGTALILITIVCIV 356


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 204 TMLFSMSILHQFHLLPSMYALMLVLVTIVCCI 299
           T L  ++ +  F ++ ++Y   L+L+TIVC +
Sbjct: 325 TQLSKVTNIIFFRVIGAIYGTALILITIVCIV 356


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 204 TMLFSMSILHQFHLLPSMYALMLVLVTIVCCI 299
           T L  ++ +  F ++ ++Y   L+L+TIVC +
Sbjct: 325 TQLSKVTNIIFFRVIGAIYGTALILITIVCIV 356


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +3

Query: 204 TMLFSMSILHQFHLLPSMYALMLVLVTIVCCI 299
           T L  ++ +  F ++ ++Y   L+L+TIVC +
Sbjct: 325 TQLSKVTNIIFFRVIGAIYGTALILITIVCIV 356


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = -1

Query: 631 SKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILNSSSWILEDLTPII--INAISRKK 461
           S+  PC    T W+ +  D+  N Q I   P+  L   +    DLT I+  I AISRKK
Sbjct: 823 SQWEPCSWLNTVWEGDLGDDELNGQ-IEAAPEMHLIKMN-KTADLTAILKRILAISRKK 879


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,117,035
Number of Sequences: 5004
Number of extensions: 63856
Number of successful extensions: 188
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)