Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00341
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1040 - 33709588-33709880,33709960-33710200,33710498-337106...    38   0.012
10_03_0029 + 7196149-7196213,7196303-7196424,7197616-7197822,719...    33   0.19 
04_03_0587 - 17580954-17581080,17581088-17581272                       29   4.2  
04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    29   5.5  
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883...    28   7.3  
10_08_0448 + 18015609-18016052,18017147-18017248,18017332-180174...    28   9.7  

>02_05_1040 -
           33709588-33709880,33709960-33710200,33710498-33710672,
           33710781-33710892,33711906-33712145,33712253-33712436
          Length = 414

 Score = 37.5 bits (83), Expect = 0.012
 Identities = 18/68 (26%), Positives = 29/68 (42%)
 Frame = +2

Query: 509 DPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILVIDFA 688
           DPR  I +G W  K +                  S +      G   ++++Q++L++DF 
Sbjct: 106 DPRDKIHHGGWMAK-IFCWVVIVFLMFFVPNGVVSFYESISKFGSGLFLLVQVVLLLDFV 164

Query: 689 HSWAEIWV 712
           H W E WV
Sbjct: 165 HGWNENWV 172



 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 429 AVYRITFATCLFFLLMALIMIGVKSSK 509
           AV R++    +FF ++A+IM G+K  K
Sbjct: 79  AVLRVSLGNFVFFTILAIIMAGIKDQK 105


>10_03_0029 +
           7196149-7196213,7196303-7196424,7197616-7197822,
           7197904-7198091,7198493-7198628,7198973-7199069,
           7199200-7199300,7199644-7199807,7200029-7200217,
           7200590-7200711,7200961-7200979
          Length = 469

 Score = 33.5 bits (73), Expect = 0.19
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +3

Query: 168 LASVLLWQHCLFTMLFSMSILH-QF-HLLPSMYALMLVLVTIVCCITLAPGLHNELQKLP 341
           +AS+LLW+  L   L   S  H QF   L + + L+  ++   CC+TL+  +   L  +P
Sbjct: 275 IASILLWRLRLHVDLLPPSFKHMQFSRFLKNGFLLLARVIAATCCVTLSASMAARLGSVP 334


>04_03_0587 - 17580954-17581080,17581088-17581272
          Length = 103

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/61 (31%), Positives = 29/61 (47%)
 Frame = -1

Query: 535 TILNSSSWILEDLTPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPVTVLSV 356
           T  NS S+ +  L   +IN +  K  +VA+ +    K  TA   S++  PG    +V  V
Sbjct: 30  TATNSVSFSVTTLPGFLINNLDTKPNNVADSVRRAVKVVTAEMDSSVGMPGLLDDSVAVV 89

Query: 355 A 353
           A
Sbjct: 90  A 90


>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
 Frame = -1

Query: 661 DNNVAEASNHSKHHPCRSKLTSW-DEECSDNATNNQ*IFDG--PKTILNSSSWILEDLTP 491
           D ++   +++S   P    +T+  DE+  D+ TN   +FDG  P ++L++ +      +P
Sbjct: 153 DPSICTQTSNSIDPPKEPSITNTGDEDIFDDDTNESDMFDGQAPSSMLDAGTTSFGSPSP 212

Query: 490 IIINAISRKKR 458
           ++   I R++R
Sbjct: 213 LLDPNIRRRQR 223


>08_02_1345 -
           26286448-26286679,26287483-26288038,26288068-26288358,
           26288953-26290516
          Length = 880

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = -1

Query: 685 KINDKNELDNNVAEASNHSKHHPCRSKLTSWDEEC 581
           +++ ++++D   AE +   K   CR +L+S D EC
Sbjct: 595 EVSSEHKIDTFSAEVTTEDKGKTCRYRLSSIDYEC 629


>10_08_0448 +
           18015609-18016052,18017147-18017248,18017332-18017475,
           18017555-18017705,18017793-18017820,18018456-18018621,
           18018701-18018764,18019320-18019423,18019572-18019710,
           18020114-18020232,18020333-18020485,18020565-18020654,
           18020952-18021029,18021671-18021829,18021914-18022117,
           18022209-18022414,18022495-18022630,18022859-18022898,
           18023329-18023408,18023569-18024228
          Length = 1088

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/15 (66%), Positives = 14/15 (93%)
 Frame = +3

Query: 216 SMSILHQFHLLPSMY 260
           S++ILHQF++LP MY
Sbjct: 802 SVAILHQFNILPEMY 816


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,148,664
Number of Sequences: 37544
Number of extensions: 410436
Number of successful extensions: 1081
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1080
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)