Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00341
(787 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0) 64 9e-11
SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0) 60 2e-09
SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0) 54 1e-07
SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.037
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 31 1.4
SB_48092| Best HMM Match : PMG (HMM E-Value=7.6) 29 4.3
SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_3140| Best HMM Match : C1_3 (HMM E-Value=7) 29 5.6
SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18) 29 5.6
SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 28 7.5
SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08) 28 9.9
>SB_38444| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1031
Score = 64.5 bits (150), Expect = 9e-11
Identities = 32/73 (43%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +2
Query: 509 DPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXAST-WMVFGMIGGFCYIVIQLILVIDF 685
D RA NGFW IK LL+ WM G+ GGF +I+IQL+L+IDF
Sbjct: 527 DVRAKFHNGFWYIKILLLLGLTAGSFFIPRHGQFHAFWMYIGLAGGFLFILIQLLLLIDF 586
Query: 686 AHSWAEIWVLNTK 724
AH W E WV T+
Sbjct: 587 AHCWNESWVEKTE 599
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 429 AVYRITFATCLFFLLMALIMIGVKSSKIQELEFKMVFGPSNIYWLL 566
++YR+ FA +F+ LMA ++IGV++ + +F F I LL
Sbjct: 500 SLYRVCFAMAMFYFLMAFVLIGVRNEEDVRAKFHNGFWYIKILLLL 545
>SB_57118| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 1457
Score = 60.5 bits (140), Expect = 2e-09
Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Frame = +2
Query: 515 RAGIQNGFWAIKY-LLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILVIDFAH 691
RA I NGFW IK L WM G+ GGF +I++Q++LVIDF H
Sbjct: 853 RARIHNGFWYIKLSFLSLLLIVAFYIPFTKMFGMVWMYVGLTGGFMFILLQIVLVIDFGH 912
Query: 692 SWAEIW-----VLNTK 724
SW+ W VLNTK
Sbjct: 913 SWSASWAEKIDVLNTK 928
Score = 46.0 bits (104), Expect = 3e-05
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +3
Query: 258 YALMLVLVTIVCCITLAPGLHNELQKLPF-CTNATDSTVTGLLPGNFKVDCDEAVGYLAV 434
Y L L + ++ ITL P + + K+P+ C T + CD VGY A
Sbjct: 777 YVLFLCVGNLLSFITLVPDMRYYIGKIPYLCDTVTSPRM-----------CDSLVGYSAA 825
Query: 435 YRITFATCLFFLLMALIMIGVKSSK 509
YRI FA +F+ L++++ V S+K
Sbjct: 826 YRIYFAMTVFYFLLSILTYNVSSTK 850
>SB_29236| Best HMM Match : TMS_TDE (HMM E-Value=0)
Length = 834
Score = 54.4 bits (125), Expect = 1e-07
Identities = 26/78 (33%), Positives = 40/78 (51%)
Frame = +2
Query: 509 DPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILVIDFA 688
DPRA IQNG W +K+ L + W G++G F +IV+Q+IL++DF
Sbjct: 424 DPRALIQNGLWVVKFGL-FFGLLVCTFFIPLEFSRVWTYVGLLGTFFFIVMQMILLVDFT 482
Query: 689 HSWAEIWVLNTKRQNRRM 742
W + T+R +R+
Sbjct: 483 RVWNASFARRTERTGKRI 500
Score = 31.9 bits (69), Expect = 0.61
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +3
Query: 420 GYLAVYRITFATCLFFLLMALIMIGVKS 503
GYLAVYRI F++L A+++ V++
Sbjct: 394 GYLAVYRICLTMATFYILFAVVLYNVRT 421
>SB_1749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 526
Score = 35.9 bits (79), Expect = 0.037
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Frame = +3
Query: 405 CDEAVGYLAVYRITFATCLFFLLMALI--MIGVKSSKIQELEFKMVFGPSNIYWLLVALS 578
CD VG++ +YRI F +FFL MA++ LE + F N++ L V LS
Sbjct: 61 CDLLVGHILLYRIYFGMFVFFLFMAVVNCQASFCMGYSALLENGLWFLKWNLFCLSVLLS 120
Query: 579 EHSSSQEV-NLLRH-GW 623
E+ N+L H GW
Sbjct: 121 LLLPEGEIGNILMHTGW 137
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 30.7 bits (66), Expect = 1.4
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Frame = -1
Query: 241 WNWC---KMDMLNNIVNKQCCHSNTLASSREVLFRKPCFQRYCT 119
W WC K ++N + + C H NT V C + +C+
Sbjct: 740 WRWCPGNKCSLVNKVTKRSCYHGNTFLDYGGVPVACACGKTWCS 783
>SB_48092| Best HMM Match : PMG (HMM E-Value=7.6)
Length = 294
Score = 29.1 bits (62), Expect = 4.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 676 DKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNN 560
DKN +NN + +SN+S + S +S + + N+ NN
Sbjct: 62 DKNNNNNNNSSSSNNSNSNSSSSSSSSSNSNSNSNSNNN 100
>SB_6864| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 84
Score = 29.1 bits (62), Expect = 4.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 608 ASTWMVFGMIGGFCYIVIQLILVIDFAHSWAEIWV 712
A + + G+IG FC V+ L+I S+ + W+
Sbjct: 31 AILFKIAGVIGSFCVAVLPFALIIPLRKSFFDAWI 65
>SB_10628| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1208
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 688 CKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSD 575
C + DK+EL + +++ HH + K WD +D
Sbjct: 157 CGMRDKDELRDKEGMREHYNAHHSGKVKREEWDRSRAD 194
>SB_3140| Best HMM Match : C1_3 (HMM E-Value=7)
Length = 340
Score = 28.7 bits (61), Expect = 5.6
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = +3
Query: 192 HCLFTM--LFSMSILHQFHLL-----PSMYALMLVLVTIVCCITLAPGLHN 323
HC FT LF++ I H H L P Y+L V C+ PG H+
Sbjct: 55 HCAFTRCTLFALRI-HPVHTLFIAYSPGAYSLHCVFTRCTLCVAHLPGAHS 104
>SB_637| Best HMM Match : HR1 (HMM E-Value=2.7e-18)
Length = 686
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 682 INDKNE-LDNNVAEASNHSKHHPCRSKLTSWDEECSDNA 569
+ D +E L N + EAS SKHHP + + C D++
Sbjct: 446 VQDNSEWLQNGLVEASQGSKHHPHKGNRDFKNGICHDSS 484
>SB_430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2202
Score = 28.3 bits (60), Expect = 7.5
Identities = 19/89 (21%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = -1
Query: 700 SPGMCKINDKNELDNNVAEASNHSKHHPCRSKLTSWDEECSDNATNNQ*IFDGPKTILNS 521
+PGM ++ N+ A + S+H K + + + N + I+ P+ + +
Sbjct: 1436 NPGMLEMGRVVGKINDAAGKVSGSQHESLLHKGSELETVANSTGNNPEAIYSKPRDVEKA 1495
Query: 520 SSWILED-LTPIIINAISRKKRHVANVIL 437
S + ED L+ + + ++RK + + IL
Sbjct: 1496 SETLSEDALSSYVKSYLNRKIESITDAIL 1524
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = -1
Query: 187 HSNTLASSREVLFRKPCF---QRYCTHVLTDASDPLISTLDAFSSNTRSR 47
HSN +SSR+++ PCF C H L+ +S L+ T N SR
Sbjct: 566 HSNINSSSRQLVSTSPCFCANSSNCQHALS-SSRQLVKTPSRQLVNASSR 614
>SB_22017| Best HMM Match : 7tm_1 (HMM E-Value=1.8e-08)
Length = 338
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = +3
Query: 204 TMLFSMSILHQFHLLPSMYALMLVLVTIVCCIT 302
T L++ + H+F+L + +L++VLV C +T
Sbjct: 205 THLWNTRLWHRFYLALASISLLIVLVAYTCVVT 237
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,358,229
Number of Sequences: 59808
Number of extensions: 482600
Number of successful extensions: 1285
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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