Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00341
         (787 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical ...    71   1e-12
Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical pr...    64   1e-10
AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical ...    47   2e-05
U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical pr...    33   0.23 
U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical pr...    33   0.23 
Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AY494975-1|AAR87492.1|  486|Caenorhabditis elegans collagen/olfa...    28   8.7  
AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical ...    28   8.7  
AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin (col...    28   8.7  

>AC024832-6|AAL27256.1|  459|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1a protein.
          Length = 459

 Score = 70.5 bits (165), Expect = 1e-12
 Identities = 32/68 (47%), Positives = 41/68 (60%)
 Frame = +2

Query: 509 DPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILVIDFA 688
           D R+ IQNGFW  KYL++               A+  M  G+IGGF +I+IQLIL++DFA
Sbjct: 119 DGRSSIQNGFWFFKYLILGALIVGFFFIRSESLATPLMYIGLIGGFMFILIQLILIVDFA 178

Query: 689 HSWAEIWV 712
           H  AE WV
Sbjct: 179 HGLAEAWV 186



 Score = 59.7 bits (138), Expect = 2e-09
 Identities = 35/86 (40%), Positives = 45/86 (52%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 MYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCDEAVGYLA 431
           MYA +L   T + CI L PG+ N+L +   FC    +            + C  A G+ A
Sbjct: 42  MYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCAHATGFQA 92

Query: 432 VYRITFATCLFFLLMALIMIGVKSSK 509
           VYR+  AT  F+LL  LIMIGVK SK
Sbjct: 93  VYRVCAATASFYLLFMLIMIGVKDSK 118


>Z93386-1|CAB07645.1|  442|Caenorhabditis elegans Hypothetical
           protein R11H6.2 protein.
          Length = 442

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 30/65 (46%), Positives = 38/65 (58%)
 Frame = +2

Query: 509 DPRAGIQNGFWAIKYLLVXXXXXXXXXXXXXXXASTWMVFGMIGGFCYIVIQLILVIDFA 688
           D R+ IQNGFW  KYLL+               A+  M  GM+G F +I+IQLIL++DFA
Sbjct: 119 DGRSSIQNGFWFFKYLLMFGIIGGFFFIGSETLATPLMYIGMLGAFLFILIQLILIVDFA 178

Query: 689 HSWAE 703
           H  AE
Sbjct: 179 HGLAE 183



 Score = 54.8 bits (126), Expect = 7e-08
 Identities = 30/85 (35%), Positives = 44/85 (51%)
 Frame = +3

Query: 255 MYALMLVLVTIVCCITLAPGLHNELQKLPFCTNATDSTVTGLLPGNFKVDCDEAVGYLAV 434
           MYALML+  T +  + L PG+  +L +  +  +  +            V+C+ A+GY AV
Sbjct: 42  MYALMLISATFMAVVMLLPGVQKKLVENKWLCDGLNEYAG--------VNCEHAIGYQAV 93

Query: 435 YRITFATCLFFLLMALIMIGVKSSK 509
           YR+      FF L  L+M GV SSK
Sbjct: 94  YRVCAGAASFFFLFMLLMFGVSSSK 118


>AC024832-7|AAL27257.1|  389|Caenorhabditis elegans Hypothetical
           protein Y57E12AL.1b protein.
          Length = 389

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 28/79 (35%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
 Frame = +3

Query: 255 MYALMLVLVTIVCCITLAPGLHNELQKLP-FCTNATDSTVTGLLPGNFKVDCDEAVGYLA 431
           MYA +L   T + CI L PG+ N+L +   FC    +            + C  A G+ A
Sbjct: 42  MYAFLLFTSTFLSCIMLLPGIQNKLAENKWFCEGLNEYA---------GISCAHATGFQA 92

Query: 432 VYRITFATCLFFLLMALIM 488
           VYR+  AT  F+LL  LI+
Sbjct: 93  VYRVCAATASFYLLFILIV 111



 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 668 ILVIDFAHSWAEIWV 712
           IL++DFAH  AE WV
Sbjct: 108 ILIVDFAHGLAEAWV 122


>U80931-3|AAO91701.1|  160|Caenorhabditis elegans Hypothetical
           protein T01B11.2b protein.
          Length = 160

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -1

Query: 226 MDMLNNIVNKQCCHSNTLASSREVLFRKPCFQRYCTHVLTDASDPLISTLDAFSS----N 59
           +D ++N+ +   CH   + +  + L    C  R+ +  LTD ++ ++STL    +    N
Sbjct: 70  LDCISNVQHVGHCHPKVVEAISKQLATSTCNVRFVSTQLTDCAEQILSTLPGLDTVLFCN 129

Query: 58  TRSRFKDLGSRTRR 17
           + S   DL  R  R
Sbjct: 130 SGSEANDLALRLAR 143


>U80931-2|AAB37999.1|  467|Caenorhabditis elegans Hypothetical
           protein T01B11.2a protein.
          Length = 467

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
 Frame = -1

Query: 226 MDMLNNIVNKQCCHSNTLASSREVLFRKPCFQRYCTHVLTDASDPLISTLDAFSS----N 59
           +D ++N+ +   CH   + +  + L    C  R+ +  LTD ++ ++STL    +    N
Sbjct: 70  LDCISNVQHVGHCHPKVVEAISKQLATSTCNVRFVSTQLTDCAEQILSTLPGLDTVLFCN 129

Query: 58  TRSRFKDLGSRTRR 17
           + S   DL  R  R
Sbjct: 130 SGSEANDLALRLAR 143


>Z73973-1|CAA98266.1|  357|Caenorhabditis elegans Hypothetical
           protein F25D1.2 protein.
          Length = 357

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = -1

Query: 535 TILNSSSWILEDL-TPIIINAISRKKRHVANVIL*TAKYPTASSQSTLKFPGNSPVTVLS 359
           T L +S ++L +L +P  ++A       +  +IL   +YPT     T+   GN+P  V S
Sbjct: 131 TFLANSMFLLSELISPTFLSAGLTASAGILYLILRPDEYPTEECTETVSIDGNTPEPVKS 190


>AY494975-1|AAR87492.1|  486|Caenorhabditis elegans
           collagen/olfactomedin domain containingprotein 2
           protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 644 FCYIVIQLILVIDFAHSWAEIWVLNTKRQN 733
           +C + I LI V+ F+H    IW L ++ Q+
Sbjct: 7   YCNLAITLIAVLAFSHIHYRIWTLESECQS 36


>AL110482-9|CAB60340.3|  372|Caenorhabditis elegans Hypothetical
           protein Y39G8B.4 protein.
          Length = 372

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/65 (23%), Positives = 35/65 (53%)
 Frame = +3

Query: 111 RTCVQYL*KHGFRNKTSRELASVLLWQHCLFTMLFSMSILHQFHLLPSMYALMLVLVTIV 290
           R+C  Y     + NK+   +A ++++    FTM+F  SI+  F+ L  ++ + ++ ++ +
Sbjct: 155 RSCASYF-LEDYENKSRTWIALLIIFFSQTFTMIF--SIVFFFNYLSYVFGISIIAISNI 211

Query: 291 CCITL 305
             + L
Sbjct: 212 GAVML 216


>AF000262-4|AAN60526.2|  486|Caenorhabditis elegans Colmedin
           (collagen plus olfactomedin)family protein 2 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +2

Query: 644 FCYIVIQLILVIDFAHSWAEIWVLNTKRQN 733
           +C + I LI V+ F+H    IW L ++ Q+
Sbjct: 7   YCNLAITLIAVLAFSHIHYRIWTLESECQS 36


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,373,218
Number of Sequences: 27780
Number of extensions: 364213
Number of successful extensions: 1078
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1027
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)