Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00341
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor prot...    25   0.80 
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    23   4.3  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   4.3  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    23   4.3  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    23   4.3  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.8  

>S76958-1|AAB33933.1|   90|Apis mellifera olfactory receptor
           protein.
          Length = 90

 Score = 25.0 bits (52), Expect = 0.80
 Identities = 9/22 (40%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +2

Query: 617 WMVFGM-IGGFCYIVIQLILVI 679
           W + G  +GGFC+ +IQ+ ++I
Sbjct: 3   WRMTGTWVGGFCHSIIQIPVII 24


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 255 MYALMLVLVTIVCCI 299
           +Y L+ VLVTI C I
Sbjct: 3   IYILLFVLVTITCVI 17


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 650 YIVIQLILVIDFAHSWAEIWVLNTKRQNRRMVCSTTDLMLTCLLS 784
           YI   LI++I    SW   W+       R  +  TT L +T L+S
Sbjct: 228 YIPSGLIVII----SWVSFWLNRNATPARVALGVTTVLTMTTLMS 268


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 650 YIVIQLILVIDFAHSWAEIWVLNTKRQNRRMVCSTTDLMLTCLLS 784
           YI   LI++I    SW   W+       R  +  TT L +T L+S
Sbjct: 228 YIPSGLIVII----SWVSFWLNRNATPARVALGVTTVLTMTTLMS 268


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
           protein.
          Length = 125

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 255 MYALMLVLVTIVCCI 299
           +Y L+ VLVTI C I
Sbjct: 3   IYILLFVLVTITCVI 17


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +2

Query: 650 YIVIQLILVIDFAHSWAEIWVLNTKRQNRRMVCSTTDLMLTCLLS 784
           YI   LI++I    SW   W+       R  +  TT L +T L+S
Sbjct: 167 YIPSGLIVII----SWVSFWLNRNATPARVALGVTTVLTMTTLMS 207


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 441 ITFATCLFFLLMALIMIGV 497
           ITFA+ L F+L+  I + V
Sbjct: 82  ITFASFLLFILLVQIAVAV 100


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 478 AISRKKRHVANVIL*TAKYPTASSQSTLKFPGN 380
           A +RKK   ++     A  PT  S  T KFP N
Sbjct: 338 AFARKKTDYSSFGKILATEPTLFSNVTPKFPRN 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 210,927
Number of Sequences: 438
Number of extensions: 4312
Number of successful extensions: 13
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)