Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00340
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    29   0.57 
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.76 
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    28   1.7  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   4.0  
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   5.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   5.3  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    26   5.3  
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   7.0  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    26   7.0  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   7.0  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   7.0  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    25   9.3  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   9.3  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = +2

Query: 539 AMPMDTAFVVTKPALNTLSSQRKNVRRRRCGKMNATRVGALRMVNP 676
           A P DT  + TKP  NTL S  K+        +N T    +R + P
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIRCIKP 667


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -2

Query: 137 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 45
           AR  F   +F V+  N   DCN TPH   +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +1

Query: 109 KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREPVGEQL 270
           +V+P NA+     HV   K +   NR   Q++    SKKC  +W +  EP+ +++
Sbjct: 19  EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEPLLDEI 72


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +2

Query: 419 LGLCSLDACRRSSTPKKFELIQGRECAPGSRGRTSVTV 532
           L L +L  CR S   K  E+  G +CA G    T  +V
Sbjct: 89  LALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASV 126


>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/39 (23%), Positives = 17/39 (43%)
 Frame = -2

Query: 719 FSGVLLVMHSILVHMGLPSEVHQHVLHSFFHIVFGAHSF 603
           F  +L  +    + + LP  ++ H LH F H     + +
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHY 73



 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 602 FGSIMCSVQASSLQMPYPSALHLQLLHWFDH 510
           F SI+C +   +L +  P +++   LH+F H
Sbjct: 35  FYSILCFLSFFALLLHLPCSIYSHTLHFFHH 65


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 589 CVQCRLRHYKCRIHRHCTYNCY 524
           C+ CR R  KC  +R C +NC+
Sbjct: 26  CLYCRRRKIKCDKNRPC-HNCF 46


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 57  EMRCLIAICFIVLARHCESGALKCSP 134
           +M   +A+  I++ RH  S AL+CSP
Sbjct: 43  DMDAKMALASILIKRHLVSTALECSP 68


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 589 CVQCRLRHYKCRIHRHCTYNCYTGSTTRS 503
           C+ CR +  KC   R C+ NC   ST +S
Sbjct: 23  CLACRRKKLKCDHGRPCS-NCLKRSTIQS 50


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 611 VRRRRCGKMNATRVGALRMVNPCALGWNASL 703
           VR +RC  + ++RV     V    +GWN++L
Sbjct: 286 VRLQRCAILKSSRVRDHAWVKSSIVGWNSTL 316


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 589 CVQCRLRHYKCRIHRHCTYNC 527
           C+ CR R  KC   +   YNC
Sbjct: 46  CLTCRKRRIKCDERKPICYNC 66


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 365 PGTSFQRDCNTCVCLDNGL 421
           P TSF  D N CV  D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/34 (29%), Positives = 13/34 (38%)
 Frame = +2

Query: 251  NQWESNCHFCRCSDSGVAECLRQDSCDQIIFTEP 352
            N W  NC  CR   +G    +     D+I    P
Sbjct: 1398 NSWIGNCQLCRTRVTGYKRKIYGKKADKIAMDSP 1431


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 80  LFYRFGATLRKWS 118
           +FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,529,340
Number of Sequences: 5004
Number of extensions: 76946
Number of successful extensions: 241
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)