Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00340
(786 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 30 1.8
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 2.4
11_06_0345 + 22544825-22544921,22545751-22545773,22546604-225466... 29 3.2
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 4.2
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 29 5.5
09_03_0091 + 12302078-12302395,12303789-12304543,12304755-12305232 28 7.3
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 28 7.3
07_01_1116 + 10308029-10308111,10308575-10308737,10308996-103090... 28 7.3
06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739 28 7.3
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 7.3
03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,951... 28 7.3
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 9.7
08_02_0314 - 15664399-15664677,15665094-15665234 28 9.7
02_01_0707 - 5276963-5278396,5280163-5280248,5280634-5281011,528... 28 9.7
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/84 (21%), Positives = 34/84 (40%)
Frame = +2
Query: 98 ATLRKWSPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNQWESNCHF 277
A + +W P M++WH + +A++ Q ++ + G G+ E CH
Sbjct: 669 ADVSEWQPSMKNWHTKDY-EKAKVHLQCDNGQKITEIKFASFGTPQG-SCGSYTEGGCHA 726
Query: 278 CRCSDSGVAECLRQDSCDQIIFTE 349
+ D C+ Q+ C + E
Sbjct: 727 HKSYDIFWKNCVGQERCGVSVVPE 750
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 93 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 218
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>11_06_0345 +
22544825-22544921,22545751-22545773,22546604-22546690,
22546809-22546885,22547357-22547510
Length = 145
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 116 SPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNQWESNC 271
SP SW RR + A++KR E ++R + +G G N +NC
Sbjct: 6 SPPTASWSRRCRPATAQVKRIAEDPDDRSLDKSAKVVIGGGQDAMNVTMTNC 57
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 4.2
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -1
Query: 441 ASKEHRPRPLSKQTQVLQSLWKEVPG 364
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -3
Query: 664 PKCTNTCCIHFSTS-SSAHILSLAR*CVQC---RLRHYK 560
P+C N+C + FS S H + L R C LR+YK
Sbjct: 27 PRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYYK 65
>09_03_0091 + 12302078-12302395,12303789-12304543,12304755-12305232
Length = 516
Score = 28.3 bits (60), Expect = 7.3
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = -1
Query: 618 RRTFFLWLDNVFSAGFVTTNAVSIGIAPTTVTLVRPRDPGAHSLPWISSNFLGVDDLLQA 439
R + F WL S GF++ V + +A TTV + H L I S F+G+ + A
Sbjct: 138 RGSAFGWLQLASSLGFISGGFVGLLLAQTTVFGIAGWRIAFH-LVAIISVFVGILNWFFA 196
Query: 438 SKEHRP--------RPLSKQT--QVLQSLWKE 373
H P RP+ KQ+ QV++ + KE
Sbjct: 197 VDPHFPAGNVGSCDRPVCKQSVWQVIEEMIKE 228
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -1
Query: 612 TFFLWLDNVFSAGFVTTNAVSIGIAPTTVTLVRPRDPGAHSL 487
TF+ +VF+ GFV N I +AP + RP D GA ++
Sbjct: 262 TFYSGSVSVFATGFVAKNISFINVAP----IPRPGDVGAQAV 299
>07_01_1116 +
10308029-10308111,10308575-10308737,10308996-10309062,
10309120-10309375,10309658-10309781,10310039-10310077
Length = 243
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Frame = +1
Query: 550 GYGICSDEACTEHIIEPKKECAPKTMWKNECNTCW--CTSDGKPMCTRMECI 699
G G C D + + + +K C ++EC C CT P C+ CI
Sbjct: 133 GKGRCKDIVSRKRLEDWRKLCNKDVEREDECGICMETCTKMVLPNCSHAMCI 184
>06_03_0211 - 17984029-17984129,17984234-17984302,17984502-17984739
Length = 135
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +1
Query: 583 EHIIEPKKECAPKTMWKNECNTCWCTSDGKPMCTRM 690
EHI K C P T +N N+C T + C ++
Sbjct: 21 EHIQVEAKSCCPSTTARNIYNSCRFTGASRDKCCKI 56
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 7.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 107 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 199
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>03_02_0568 + 9514715-9514944,9515174-9515300,9515529-9515684,
9515765-9516102,9516191-9516329,9517083-9517152,
9517201-9517307,9517387-9517437,9517549-9517660,
9517783-9517869,9517958-9518133,9518479-9518586,
9518654-9518812,9518888-9518971,9519053-9519258,
9519565-9519666,9519768-9519877,9519963-9520114,
9520380-9520548,9520841-9520878,9521963-9522571,
9523314-9523784,9523786-9523871,9524396-9524906,
9525388-9525412,9526001-9526051,9526228-9526301,
9526412-9526534,9526667-9526738,9526924-9527020,
9527174-9527283
Length = 1649
Score = 28.3 bits (60), Expect = 7.3
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 642 AFIFPHRLRRTFFLWLDNVFSAGFVTTNAVSIGIAPTTVTLVRPRDP 502
++++P R FL D+ F V V +G PTT T +R P
Sbjct: 1508 SYLYPADWRDFDFLGHDSAFKDRNVALQCVRVGFIPTTKTDIRDLGP 1554
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 347 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 469
EP G F+ +TC+ G+GL + A + S P++
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRR 82
>08_02_0314 - 15664399-15664677,15665094-15665234
Length = 139
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 763 PLIPERIL-CPGSAQTSRECY**CIPS*CTWVYHPKCTNTCCIHFSTSSSAHILSLAR 593
PL+ R C QT E + CIP V PKCT+TC + T S +SL +
Sbjct: 81 PLMSNRTFDCVTLPQTHMEGH--CIPYKDIMVI-PKCTDTCSMQTKTPSKNRRISLLK 135
>02_01_0707 -
5276963-5278396,5280163-5280248,5280634-5281011,
5281453-5281690,5281787-5282052,5282148-5282526
Length = 926
Score = 27.9 bits (59), Expect = 9.7
Identities = 21/74 (28%), Positives = 33/74 (44%)
Frame = +2
Query: 506 SRGRTSVTVVGAMPMDTAFVVTKPALNTLSSQRKNVRRRRCGKMNATRVGALRMVNPCAL 685
S + + TVV P+ A + PA SSQ + R G+ A R+ A R
Sbjct: 11 SAAKNASTVVVGSPLLAASPASSPAAACCSSQLQQRRAAGPGRRGAGRLAAPRCSTIEQA 70
Query: 686 GWNASLITLPRSLS 727
+S +T+ R+L+
Sbjct: 71 AGVSSAVTVDRTLT 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,739,136
Number of Sequences: 37544
Number of extensions: 588266
Number of successful extensions: 1780
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1779
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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