Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00340
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16) 33 0.26
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14) 32 0.61
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0) 31 1.1
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83) 30 1.8
SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 30 1.8
SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_16910| Best HMM Match : EGF (HMM E-Value=0) 30 2.4
SB_54574| Best HMM Match : WD40 (HMM E-Value=0) 30 2.4
SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06) 29 3.2
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6
SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015) 29 5.6
SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87) 29 5.6
SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25) 28 7.5
SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085) 28 7.5
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4) 28 7.5
SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06) 28 9.9
SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
Length = 705
Score = 33.1 bits (72), Expect = 0.26
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +2
Query: 281 RCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDAC 445
R + G +C+++ C I + + PG +DC CVC D L C+ C
Sbjct: 224 RVNAVGKVQCIKRKECPCIHDAKIYK--PGDKVYKDCQLCVCKDGQLTNCTGQKC 276
>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
Length = 338
Score = 31.9 bits (69), Expect = 0.61
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 5/91 (5%)
Frame = +2
Query: 269 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPG-TSFQRDCNTCVCLDNGLGLCSLDAC 445
CH CS SG+ C + SC I + C+PG T +C C + G S A
Sbjct: 215 CHIDECS-SGINNCHQDASCANTIGSFACTCKPGYTGDGINCADC-AMGMESGAISDSAI 272
Query: 446 RRSSTPKKFELIQGR----ECAPGSRGRTSV 526
SS +K GR PG+ R +V
Sbjct: 273 TASSYLEKLRPSNGRLNDPSVFPGNTDRNTV 303
>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 320
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 305 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 463
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C ++ P
Sbjct: 44 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 100
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 1.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Frame = +2
Query: 305 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 463
EC +RQD+C +T P+ C P ++F D +TC D+ ++ C ++ P
Sbjct: 1018 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 1074
>SB_43238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2532
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Frame = -2
Query: 599 GSIMCSVQASSLQMPYPSALHLQLLHWFDHAIPERILCPGSA-----QTSWELTIFYRHP 435
G+ +++A + +P S+L + + W +H +P +LC A ++SW ++ R P
Sbjct: 2028 GNARKAIEALAPLVPEMSSLGVPICDWHEHCLPFSLLCDCLAECEDIESSWLQEVYQRLP 2087
Query: 434 RSIGPD 417
+ D
Sbjct: 2088 CRVAAD 2093
>SB_58773| Best HMM Match : DUF834 (HMM E-Value=0.83)
Length = 248
Score = 30.3 bits (65), Expect = 1.8
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Frame = -1
Query: 750 SAFSALDQLRLLGSVIS---DAFHPSAHGFTIRSAPTRVAFIFP 628
S FS +L L GS IS +HP HG TI SA ++ FP
Sbjct: 37 SRFSKKYRLLLHGSTISRLSKKYHPLLHGSTISSARNTISSSFP 80
>SB_53796| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +1
Query: 628 WK-NECNTCWCTSDGKPMCTRMEC 696
WK ++C+TC+C +GK C C
Sbjct: 358 WKPDDCSTCFCKKNGKVECAHQMC 381
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 625 MWK-NECNTCWCTSDGKPMCTRMEC 696
MW+ ++C C C SD K CT+ C
Sbjct: 437 MWQQDDCTACICGSDRKLQCTKKTC 461
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 30.3 bits (65), Expect = 1.8
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 691 PS*CTWVYHPKCTNTCCIHFSTSSS 617
PS C W P CT+ CC S++
Sbjct: 961 PSSCAWTCAPDCTSECCARHKVSAA 985
>SB_10656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1931
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/76 (28%), Positives = 32/76 (42%)
Frame = +1
Query: 538 CNADGYGICSDEACTEHIIEPKKECAPKTMWKNECNTCWCTSDGKPMCTRMECITNNTPE 717
C D G SDE C E + +C P + + +CN C G P C + +C+ N
Sbjct: 639 CECDTKGALSDE-CQE--FGGQCQCRPYVIGR-QCNRCKTGYYGFPNCKKCQCVFCN--- 691
Query: 718 KSELIQGRECAPGSTG 765
E +C P + G
Sbjct: 692 --EETGACDCPPNTVG 705
>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
Length = 1552
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Frame = +2
Query: 371 TSFQRDCNTCVCLDNGLG----LCSLDACRRSSTPKKFELIQGRECAP 502
T+ + DCNTC C+ +C D C SST G C P
Sbjct: 1195 TTVKEDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVP 1242
Score = 29.5 bits (63), Expect = 3.2
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = +1
Query: 622 TMWKNECNTCWCTSDGKPMCTRMECITNNTPEKSELIQGRECAPGS 759
T K +CNTC C G CT++ C +N S + C+ GS
Sbjct: 1195 TTVKEDCNTCSCV-HGTRTCTKVVCGPDNC-LNSSTVSNDICSMGS 1238
>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
Length = 1050
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Frame = -2
Query: 743 SLPWISSDF--SGVLLVMHS-ILVHMGLPSEVHQHVLHSFFHIVF-GAHSFFGSIMCSVQ 576
SL W+ S +G V+ I V + +E VL +F H V AH F +M +
Sbjct: 398 SLSWVVSKLKVTGPSDVISDYISVRDSIKAEQELEVLDNFHHFVSTNAHLFVAKMMPDIV 457
Query: 575 ASSLQMPYPSALHLQLL 525
+LQ P S +H Q +
Sbjct: 458 QLALQQPSLSQVHTQAM 474
>SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)
Length = 218
Score = 29.5 bits (63), Expect = 3.2
Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 25/102 (24%)
Frame = +1
Query: 523 CNSCRCNADGYGICS---------DEACTEHIIEPKKEC------------APKTMW--- 630
C C CN+ CS D AC ++++EPK+ C A + W
Sbjct: 104 CQKCECNSGKASSCSIGYHCDALLDGACEKYVLEPKQCCPTCACVHNNTEMAEGSTWAFR 163
Query: 631 -KNECNTCWCTSDGKPMCTRMECITNNTPEKSELIQGRECAP 753
+C+ C C S G C+ + C +S+ I +C P
Sbjct: 164 KDAKCHECTC-SRGNGKCSFVGCSCPVGHHQSDSIPEGKCCP 204
>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 344
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 368 GTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELI-QGRE 493
G DCN+CVC G +C+ C SS K L+ QG +
Sbjct: 256 GAEIPTDCNSCVCA-CGRWVCTALDCNPSSNHVKASLVLQGEQ 297
>SB_51894| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 385
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Frame = +1
Query: 562 CSDEACTEHIIEPKKECAPKTM---WKNECNTCWCTSDGKPMCTRMEC 696
C +C EH E + + + K + W++E T W G P+ T C
Sbjct: 325 CHGPSCIEHKREARTDGSVKVVPYAWRSERETRWGCRGGNPLPTTCGC 372
>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 680
Score = 28.7 bits (61), Expect = 5.6
Identities = 16/42 (38%), Positives = 19/42 (45%)
Frame = -2
Query: 638 SFFHIVFGAHSFFGSIMCSVQASSLQMPYPSALHLQLLHWFD 513
SF H+ F HS S M V S L++ H LHW D
Sbjct: 235 SFMHLAFLHHSMLSSDMTMVLPSHLEV--TQGCHHTTLHWDD 274
>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2870
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = -3
Query: 733 GSAQTSRECY**CIPS*CTWVYHPKCTNTCCIHFSTSSSAHI 608
GSA TS +C PS C P C CC+ TS +
Sbjct: 1897 GSAPTSSQC-----PSSCLLACQPSCPMECCLAAFTSKPVEV 1933
>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 611
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/87 (26%), Positives = 30/87 (34%)
Frame = +2
Query: 173 RQTESDNNR*RVCRPRNAVGSGMPGGNQWESNCHFCRCSDSGVAECLRQDSCDQIIFTEP 352
R S N R C + S N + C R + S + S EP
Sbjct: 213 RSNTSANTRANTCSNTSTYTSTNTRANTSSNTCADTRSNTSTSSYTGTNTSASYCRTPEP 272
Query: 353 VRCQPGTSFQRDCNTCVCLDNGLGLCS 433
RC P +F D C + NGL + S
Sbjct: 273 -RCPPLVNFSLDLPECFAIRNGLQVVS 298
>SB_11329| Best HMM Match : DUF1151 (HMM E-Value=0.0015)
Length = 746
Score = 28.7 bits (61), Expect = 5.6
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Frame = -2
Query: 680 HMGLPSEVHQHVLHSFFHIVFGAHSFFGSIMCSVQ-ASSLQMPYPSALHLQLLHWFD 513
H+G+P E Q V + + + F S+ C + ASS++ PYPSA++++ L +FD
Sbjct: 457 HLGIPGEFIQ-VFGDWASDAYRGYLEF-SMPCKLALASSIRTPYPSAVNVRPL-FFD 510
>SB_5598| Best HMM Match : C1_1 (HMM E-Value=0.87)
Length = 296
Score = 28.7 bits (61), Expect = 5.6
Identities = 23/79 (29%), Positives = 29/79 (36%)
Frame = +2
Query: 380 QRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELIQGRECAPGSRGRTSVTVVGAMPMDTA 559
+ + + +CLD G L CR T + L C P R R S P+ A
Sbjct: 101 KEEFHCAICLDLLEGY--LVKCRACGTRLPYHLCNSHPCPPRKRQRAS------SPVPAA 152
Query: 560 FVVTKPALNTLSSQRKNVR 616
VV P TL VR
Sbjct: 153 AVVLDPQTRTLEQMLNEVR 171
>SB_12890| Best HMM Match : A2M_recep (HMM E-Value=1.8e-25)
Length = 203
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Frame = -3
Query: 667 HPKCTNTCCIHFSTSSSAHILSL-AR*CVQCRLRHYKCRIHRHCT 536
HP CTNT C S++ I R +Q + R C HR C+
Sbjct: 43 HPICTNTSCGLLRECSTSRIARFPKRDFIQNQERKTSCFNHRFCS 87
>SB_56871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 311
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/58 (29%), Positives = 21/58 (36%)
Frame = -3
Query: 670 YHPKCTNTCCIHFSTSSSAHILSLAR*CVQCRLRHYKCRIHRHCTYNCYTGSTTRSRS 497
Y P CT+ S+ H L + CR RH I CYT +S S
Sbjct: 133 YRPCCTDLVIQTLSSYRPCHHTDLVMQTLSCRPRHTDLVIQTSSYRPCYTDLVIQSNS 190
>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
Length = 350
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 580 CRLRHYKCRIHRHCT--YNCYTGSTTRSRSAF 491
C++++Y CR R C Y Y G R R +
Sbjct: 128 CKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 159
>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
Length = 165
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Frame = -3
Query: 580 CRLRHYKCRIHRHCT--YNCYTGSTTRSRSAF 491
C++++Y CR R C Y Y G R R +
Sbjct: 65 CKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 96
>SB_19393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1660
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +2
Query: 527 TVVGAMPMDTAFVVTKPALNTLSS--QRKNVRRRRCGKMNATRVGALRMV 670
+V G+ PM++ V + P++NTLS N R R + ++ + L V
Sbjct: 608 SVSGSPPMESGHVQSSPSINTLSGIPDADNGRTRSASQNSSANIDLLSQV 657
>SB_38753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/93 (26%), Positives = 32/93 (34%)
Frame = +2
Query: 443 CRRSSTPKKFELIQGRECAPGSRGRTSVTVVGAMPMDTAFVVTKPALNTLSSQRKNVRRR 622
CR T + L C P R R + P+ A VV P TL VR
Sbjct: 144 CRACGTRLPYHLCNSHPCPPRKRQRAN------SPVPAAAVVLDPQTRTLERMLNEVRTG 197
Query: 623 RCGKMNATRVGALRMVNPCALGWNASLITLPRS 721
R + R+G L + C + LP S
Sbjct: 198 RVSP-DVARLGNLIVNTICKNSEDGITARLPGS 229
>SB_23299| Best HMM Match : zf-C3HC4 (HMM E-Value=5.9e-06)
Length = 418
Score = 27.9 bits (59), Expect = 9.9
Identities = 25/93 (26%), Positives = 32/93 (34%)
Frame = +2
Query: 443 CRRSSTPKKFELIQGRECAPGSRGRTSVTVVGAMPMDTAFVVTKPALNTLSSQRKNVRRR 622
CR T + L C P R R + P+ A VV P TL VR
Sbjct: 242 CRACGTRLPYHLCNSHPCPPRKRQRAN------SPVPAAAVVLDPQTRTLERMLNEVRTG 295
Query: 623 RCGKMNATRVGALRMVNPCALGWNASLITLPRS 721
R + R+G L + C + LP S
Sbjct: 296 RVSP-DVARLGNLIVNTICKNSEDGITARLPGS 327
>SB_6887| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 875
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Frame = +1
Query: 484 GQRMRSGIAWSNQ-----CNSCRCNADGYGICSDEACTEHIIEPKK---ECAP 618
GQ+ +G +W+N+ C CRC G+ C+ C+ P+ +C P
Sbjct: 218 GQKYANGKSWTNKPNEDTCFQCRC-IKGFAQCTRTECSRDCPNPEPIPGQCCP 269
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,629,752
Number of Sequences: 59808
Number of extensions: 700457
Number of successful extensions: 2201
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2196
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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