Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00340
         (786 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   4.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   5.6  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    22   7.4  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.8  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 673 VYHPKCTNTCCIHFSTSSSA 614
           ++HP C     +H +TSSS+
Sbjct: 400 LHHPNCKINRKVHHTTSSSS 419


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 785 TTVTLVRPVDPGAHS 741
           TTV LV   DPG H+
Sbjct: 121 TTVELVDATDPGEHN 135



 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 534 TTVTLVRPRDPGAHS 490
           TTV LV   DPG H+
Sbjct: 121 TTVELVDATDPGEHN 135


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -2

Query: 542 LHLQLLHWFDHAIPERILCPGSAQTSWELT 453
           ++++ + + +  +PE ILCP    T  E T
Sbjct: 425 VYVREIAFSESCLPEEILCPHFNVTDGETT 454


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/25 (24%), Positives = 12/25 (48%)
 Frame = -1

Query: 327 QLSCLKHSATPESEHLQKWQLLSHW 253
           Q++  +    P  +HL +W  +  W
Sbjct: 609 QIALSEFVINPHQQHLDQWNWVYEW 633


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 746 HSLPWISSDFSGVLLV 699
           H L W +S+F+G+ ++
Sbjct: 65  HHLKWNASEFAGIRVI 80


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 7/15 (46%), Positives = 7/15 (46%)
 Frame = -3

Query: 679  TWVYHPKCTNTCCIH 635
            TW YH      C IH
Sbjct: 1676 TWGYHHNVNKHCTIH 1690


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 242,003
Number of Sequences: 438
Number of extensions: 5183
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)