Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00339
         (798 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7PUG1 Cluster: Chromosome chr7 scaffold_31, whole geno...    34   3.6  
UniRef50_Q54ZG0 Cluster: Putative uncharacterized protein; n=3; ...    34   3.6  
UniRef50_A7PUG4 Cluster: Chromosome chr7 scaffold_31, whole geno...    34   4.8  
UniRef50_A7PUG2 Cluster: Chromosome chr7 scaffold_31, whole geno...    33   8.3  

>UniRef50_A7PUG1 Cluster: Chromosome chr7 scaffold_31, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_31, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 631

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 14/35 (40%), Positives = 24/35 (68%)
 Frame = +1

Query: 631 INRPPSNLNNFKLNYFTYF*FIRVLIHCLITTISI 735
           +++ P NL +F +NY T F FIR+LI  ++ ++ I
Sbjct: 271 LSQRPDNLRDFPVNYDTCFNFIRLLIQAILLSLGI 305


>UniRef50_Q54ZG0 Cluster: Putative uncharacterized protein; n=3;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 1250

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
 Frame = +2

Query: 65  LKNIIQPPNYGMDISL*TVID*T-RIVIYIFKLFFIDVRLNVVSKESETDI 214
           L NII PPN+ +++ L +  D   R +IY+F L F  +RL + S +S + I
Sbjct: 492 LINIIIPPNFKLNLQLFSQTDINHRFLIYVFSLSFKSLRLFINSMDSISTI 542


>UniRef50_A7PUG4 Cluster: Chromosome chr7 scaffold_31, whole genome
           shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome
           chr7 scaffold_31, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 410

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +1

Query: 631 INRPPSNLNNFKLNYFTYF*FIRVLIHCLITTISI 735
           +++ P +L NF +NY T F FIR+LI  ++  + I
Sbjct: 242 LSQRPDDLRNFPVNYDTCFNFIRLLIQAILLVLGI 276


>UniRef50_A7PUG2 Cluster: Chromosome chr7 scaffold_31, whole genome
           shotgun sequence; n=7; cellular organisms|Rep:
           Chromosome chr7 scaffold_31, whole genome shotgun
           sequence - Vitis vinifera (Grape)
          Length = 438

 Score = 33.1 bits (72), Expect = 8.3
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 643 PSNLNNFKLNYFTYF*FIRVLIHCLITTISI 735
           P +L NF +NY T F FIR+LI  ++  + I
Sbjct: 34  PDDLRNFPMNYDTCFNFIRLLIQAILIPLGI 64


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,558,216
Number of Sequences: 1657284
Number of extensions: 12877146
Number of successful extensions: 26753
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25586
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26750
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)