Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00339
         (798 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   5.4  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    26   5.4  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    25   9.5  
SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces pomb...    25   9.5  

>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 386 NVKIYFSFIYLKSMYFKTIK 445
           N+KI+   IY+ S Y +TIK
Sbjct: 132 NIKIFSGKIYIASQYIRTIK 151


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 419  KSMYFKTIKTLFRKLKRSRKTKNTYLNNRT*FIILSPI 532
            KS +   I  LF KLK  +K  ++  N    F+IL  +
Sbjct: 958  KSFWGSRIPFLFNKLKSKQKAVSSSFNTENSFLILQAV 995


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 10  GLRTRTTTRSAEPSQRGLAKKYNPTPQLWNGYFSVNS 120
           GL ++T   S+ PS     K  N + + W GY+S N+
Sbjct: 376 GLHSKTYPCSSLPSPSISKKDENGSVKEWFGYYSCNN 412


>SPAC23H3.09c |gly1||threonine aldolase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 376

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 10  GLRTRTTTRSAE-PSQRGLAKKYNPTPQLWNGYFS 111
           G  T TTT +   PS +G AKKY P    WN + S
Sbjct: 3   GSVTSTTTETRLCPSNQGSAKKYRP----WNDFRS 33


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,049,473
Number of Sequences: 5004
Number of extensions: 60072
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)