Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00339
         (798 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)             31   1.1  
SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)             28   7.6  

>SB_35849| Best HMM Match : Fibrinogen_C (HMM E-Value=0.15)
          Length = 631

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/57 (29%), Positives = 31/57 (54%)
 Frame = -3

Query: 193 GHYVQTHINKKEFKYIDNNSRLVNHCSQRNIHSIIGGLDYIF*QVRAGSVLRSVSWC 23
           G YV THI+K E++ +   S L  +C+++  ++   G ++   +VR G V    + C
Sbjct: 530 GKYVATHISKNEWRKLVPGSSLQRNCNRQGFNNAPAGGNHS--KVRIGFVANQENNC 584


>SB_46027| Best HMM Match : Fibrinogen_C (HMM E-Value=0.24)
          Length = 901

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -3

Query: 193 GHYVQTHINKKEFKYIDNNSRLVNHCSQRNIHS 95
           G YV THI+K E++ +   S L  +C+ +  ++
Sbjct: 799 GKYVATHISKNEWRKLVPGSSLQRNCNMQGFNN 831


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,852,164
Number of Sequences: 59808
Number of extensions: 385655
Number of successful extensions: 558
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 558
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)