Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00339
         (798 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical pr...    29   3.9  

>Z83123-5|CAB05611.1|  332|Caenorhabditis elegans Hypothetical
           protein T04A11.8 protein.
          Length = 332

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 628 CINRPPSNLNNFKLNYFTYF*FIRVLIHCLITTISI 735
           C N+PPS+L N   N   YF +  +L   L +T+ +
Sbjct: 102 CYNQPPSHLLNLLFNTQAYFNYCVMLYPVLFSTVRL 137


>U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical
           protein T25E4.2 protein.
          Length = 471

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -3

Query: 244 IKISFHRITQYISFTFLGHYVQTHINKKEFKY 149
           ++I FHR+T+  +FTF GH    H++  E+++
Sbjct: 409 LEIIFHRMTK--NFTFFGHSYNYHLSGFEWRF 438


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,412,740
Number of Sequences: 27780
Number of extensions: 319601
Number of successful extensions: 637
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)