Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00339
         (798 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   2.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   2.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    23   3.3  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    22   5.7  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   7.6  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 436 LKIHTFQINKRKINFHIVL 380
           +KI  +++N +  NFHI +
Sbjct: 488 IKIRQYRLNHKPFNFHITI 506


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = -3

Query: 436 LKIHTFQINKRKINFHIVL 380
           +KI  +++N +  NFHI +
Sbjct: 488 IKIRQYRLNHKPFNFHITI 506


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/43 (32%), Positives = 21/43 (48%)
 Frame = +1

Query: 16  RTRTTTRSAEPSQRGLAKKYNPTPQLWNGYFSVNSD*LNENCY 144
           R R+  RS +  +R  +K+      L N Y S  S+  N+N Y
Sbjct: 60  RERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNDNNY 102


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +1

Query: 16  RTRTTTRSAEPSQRGLAKKYNPTPQLWNGYFSVNSD*LNENCY 144
           R R+  RS +  +R  +K+      L N Y S  S+  N N Y
Sbjct: 60  RERSKERSRDKRERERSKERKIISSLSNNYISNISNYNNNNNY 102


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = +3

Query: 138 LLSIYLNSFLLMCV 179
           +  +YL+SF+L+C+
Sbjct: 119 MFGLYLSSFVLVCI 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,066
Number of Sequences: 438
Number of extensions: 4252
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)