Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00337
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.7  
SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55 family|S...    28   1.7  
SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    26   5.1  

>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -3

Query: 269 RNFKTNNFNSASH*ILSKKSAAKIRHFWQHGNIFSRYYLRVQEVFYLN-VCSK 114
           RN  T      S   L +++ ++++ +W   N+   YY    E FY+N VCS+
Sbjct: 2   RNLNTELDFFVSFSALKEENISQLKVYWAQSNLVELYY---GESFYINIVCSR 51


>SPAC1A6.02 ||SPAC23C4.21|WD repeat protein, human WDR55
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 361

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 174 VAMLPKVPNFGSRLL*QNSMRS*VKIVCFKITANFLVNC 290
           + +L  +PN   R++ Q+S RS V  V      NFLV+C
Sbjct: 262 IRLLHILPNKYERIIGQHSSRSTVDAVDVTTEGNFLVSC 300


>SPAC1142.09 ||SPAC8C9.02|dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 115

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
 Frame = +3

Query: 609 NKYSSTLITYNFLLQYISRFYQPSTKLMIINM--DCADSF 722
           N YS+ LI+Y   +  IS F++P T   + N+   C  SF
Sbjct: 74  NSYSAILISYYRCIFIISLFHRPLTIHFLTNLTHGCTRSF 113


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 752 SFLNFITSASERISTIHIYYHQFCT 678
           +   F     E++  IH YYH+ CT
Sbjct: 198 ALFTFEVVCPEKLEIIHPYYHRICT 222


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,680,974
Number of Sequences: 5004
Number of extensions: 48602
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)