Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00336
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F ...    71   1e-13
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    71   2e-13
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    29   0.93 
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam...    26   6.6  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.6  

>SPAC16E8.15 |tif45|tif1|translation initiation factor eIF4E, 4F
           complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 218

 Score = 71.3 bits (167), Expect = 1e-13
 Identities = 32/78 (41%), Positives = 45/78 (57%), Gaps = 1/78 (1%)
 Frame = +1

Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEI 453
           DY+ F++G+RP WED  NK GG+W     K +    LD  WL  VL  IGE  +    E+
Sbjct: 92  DYSFFREGVRPEWEDVHNKTGGKWAFQ-NKGRGGNALDEMWLTTVLAAIGETLDPTGQEV 150

Query: 454 CGAVVNVRPKVDKIAIWT 507
            G V+N+R    ++A+WT
Sbjct: 151 MGVVINMRKGFYRLAVWT 168



 Score = 43.2 bits (97), Expect = 4e-05
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 107 FLIKHPLQNQWSLWF-YDNDRNKTWEENLIELTTFDTVEDFWRLYHHI 247
           F +KHPL   W+LWF         W E    + TF++VE+FW ++++I
Sbjct: 34  FNLKHPLARPWTLWFLMPPTPGLEWNELQKNIITFNSVEEFWGIHNNI 81


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 70.5 bits (165), Expect = 2e-13
 Identities = 33/78 (42%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
 Frame = +1

Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFE-NSDEI 453
           DY+ F +GIRP WED  N  GG+W  + + K + ++LD  WL +VL  IGE  +    E+
Sbjct: 118 DYSYFLKGIRPEWEDPQNMNGGKW--AYQSKHKGSNLDELWLYMVLAAIGETLDPTGKEV 175

Query: 454 CGAVVNVRPKVDKIAIWT 507
            G V N+R    +IA+WT
Sbjct: 176 TGVVCNMRKGFYRIAVWT 193



 Score = 46.8 bits (106), Expect = 3e-06
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
 Frame = +2

Query: 86  NAEVPPEFLIKHPLQNQWSLWFY-DNDRNKTWEENLIELTTFDTVEDFWRLYHHI 247
           NAE    F+  HPLQ++W+LWF     +   W + L E+ +F TVE+FW ++  I
Sbjct: 55  NAETA--FVKTHPLQHEWTLWFLKPPTQGLEWSDLLKEIISFKTVEEFWGIFKTI 107


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.93
 Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
 Frame = +2

Query: 569 DTRQDW-FPSTQRH-NG*A*FCDQESIHCLVLAL 664
           D  Q+W FP TQ++ N    FC+Q   H L+LAL
Sbjct: 98  DAMQNWIFPQTQQYRNYQKEFCEQALFHNLLLAL 131


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2685

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 107 FLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTF 208
           F I+  L+   +  FY N +NK W  N  +L TF
Sbjct: 511 FEIESSLRLSSNKVFYHNPKNKKWLINTSDLITF 544


>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
           Mam3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1082

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 SSTRYKTSGVSGFTTMTETKHG 179
           ++T Y TSG  GFTT   T+ G
Sbjct: 647 TTTEYTTSGSVGFTTTLATQSG 668


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 301 IRPMWEDDANKMGGRWLIS-LEKKQRFTDLDRFWLDVV 411
           +  +WE   N   G +L   +EKK  F  +DR+W  V+
Sbjct: 161 VAALWEQ-FNIFHGSYLFDEIEKKSSFEIIDRWWTSVL 197


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,116
Number of Sequences: 5004
Number of extensions: 60359
Number of successful extensions: 177
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)