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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00336
         (746 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857...    85   7e-17
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449...    84   1e-16
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065...    79   4e-15
02_04_0430 + 22834405-22834839                                         29   3.9  
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915...    29   5.2  
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490...    28   6.9  
02_02_0106 + 6814391-6817007,6817086-6817462                           28   9.1  

>03_02_0446 -
           8567436-8567567,8567649-8567768,8569837-8569914,
           8570018-8570122,8570214-8570306,8570464-8570619
          Length = 227

 Score = 84.6 bits (200), Expect = 7e-17
 Identities = 35/76 (46%), Positives = 54/76 (71%)
 Frame = +1

Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEIC 456
           D  +FK+GIRP+WED AN+ GG+W+I  +K    T   RFW D+VL+L+G+  + SD++C
Sbjct: 105 DLHLFKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVC 160

Query: 457 GAVVNVRPKVDKIAIW 504
           G V++VR   D +++W
Sbjct: 161 GVVLSVRFNEDILSVW 176



 Score = 39.9 bits (89), Expect = 0.002
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
 Frame = +2

Query: 119 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHI 247
           HPL+ ++ LW+       R++++E+N+ ++  F TVE FW  Y H+
Sbjct: 49  HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHL 94


>10_08_0323 +
           16743358-16743566,16744536-16744704,16744834-16744959,
           16745813-16745878,16745997-16746047
          Length = 206

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 35/84 (41%), Positives = 53/84 (63%)
 Frame = +1

Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
           S++    D+ +FK G+ P WED     GG+W +   +K   T L+  WL+ ++ LIGE F
Sbjct: 79  SKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQF 135

Query: 436 ENSDEICGAVVNVRPKVDKIAIWT 507
           + S+EICG V +VR + DK+A+WT
Sbjct: 136 DESEEICGVVASVRQRGDKLALWT 159



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = +2

Query: 119 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHI 247
           H L  QW+ W+    + K    W  +L +  TFDTVE+FW LY  I
Sbjct: 30  HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQI 75


>01_07_0331 +
           42804385-42804659,42806175-42806340,42806424-42806549,
           42807142-42807207,42807645-42807698,42808843-42809019,
           42809100-42809102
          Length = 288

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 39/84 (46%), Positives = 50/84 (59%)
 Frame = +1

Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
           S+L  G D+  FK  I P WED     GG+W  S  + +     D  WL  +L +IGE F
Sbjct: 101 SKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQF 156

Query: 436 ENSDEICGAVVNVRPKVDKIAIWT 507
           +  DEICGAVV+VR K ++IAIWT
Sbjct: 157 DYGDEICGAVVSVRGKQERIAIWT 180



 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
 Frame = +2

Query: 119 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHI 247
           HPL++ W+ WF DN + K    TW  ++  + TF TVEDFW LY++I
Sbjct: 52  HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNI 97



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = +3

Query: 510 DAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 635
           +A  + A I IGK+ KE L     IGF VH D + K+   ++
Sbjct: 182 NAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223


>02_04_0430 + 22834405-22834839
          Length = 144

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 365 FSRLISHLPPILLASSSHIGRM 300
           FSR+ S LPP L +  SHIGR+
Sbjct: 95  FSRVGSPLPPTLSSGGSHIGRI 116


>09_02_0423 +
           9153088-9153181,9153281-9153378,9153532-9153708,
           9153827-9153927,9154334-9154490
          Length = 208

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 89  AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 184
           AEV PE ++ HP  +Q   + Y  D N +W E
Sbjct: 2   AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33


>01_05_0104 +
           18148396-18148642,18148797-18148886,18148972-18149072,
           18149174-18149287,18149381-18149462,18149592-18149659,
           18149747-18149806,18149885-18150009,18150663-18150861,
           18150942-18151073,18151152-18151244,18151360-18152244,
           18152339-18152664,18153003-18153341,18153911-18153996,
           18154054-18154139
          Length = 1010

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +1

Query: 262 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 405
           LR   ++   + G R + E++  ++  +W + LE KQR   L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892


>02_02_0106 + 6814391-6817007,6817086-6817462
          Length = 997

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -1

Query: 452 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 297
           + SE  K SP+     SN NLS  +    CF  +L S    I++ ++S  G++P
Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,016,379
Number of Sequences: 37544
Number of extensions: 370936
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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