BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00336 (746 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 85 7e-17 10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 84 1e-16 01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 79 4e-15 02_04_0430 + 22834405-22834839 29 3.9 09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 5.2 01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 6.9 02_02_0106 + 6814391-6817007,6817086-6817462 28 9.1 >03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914, 8570018-8570122,8570214-8570306,8570464-8570619 Length = 227 Score = 84.6 bits (200), Expect = 7e-17 Identities = 35/76 (46%), Positives = 54/76 (71%) Frame = +1 Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEIC 456 D +FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++C Sbjct: 105 DLHLFKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVC 160 Query: 457 GAVVNVRPKVDKIAIW 504 G V++VR D +++W Sbjct: 161 GVVLSVRFNEDILSVW 176 Score = 39.9 bits (89), Expect = 0.002 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%) Frame = +2 Query: 119 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHI 247 HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+ Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHL 94 >10_08_0323 + 16743358-16743566,16744536-16744704,16744834-16744959, 16745813-16745878,16745997-16746047 Length = 206 Score = 83.8 bits (198), Expect = 1e-16 Identities = 35/84 (41%), Positives = 53/84 (63%) Frame = +1 Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435 S++ D+ +FK G+ P WED GG+W + +K T L+ WL+ ++ LIGE F Sbjct: 79 SKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQF 135 Query: 436 ENSDEICGAVVNVRPKVDKIAIWT 507 + S+EICG V +VR + DK+A+WT Sbjct: 136 DESEEICGVVASVRQRGDKLALWT 159 Score = 42.7 bits (96), Expect = 3e-04 Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%) Frame = +2 Query: 119 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHI 247 H L QW+ W+ + K W +L + TFDTVE+FW LY I Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQI 75 >01_07_0331 + 42804385-42804659,42806175-42806340,42806424-42806549, 42807142-42807207,42807645-42807698,42808843-42809019, 42809100-42809102 Length = 288 Score = 79.0 bits (186), Expect = 4e-15 Identities = 39/84 (46%), Positives = 50/84 (59%) Frame = +1 Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435 S+L G D+ FK I P WED GG+W S + + D WL +L +IGE F Sbjct: 101 SKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQF 156 Query: 436 ENSDEICGAVVNVRPKVDKIAIWT 507 + DEICGAVV+VR K ++IAIWT Sbjct: 157 DYGDEICGAVVSVRGKQERIAIWT 180 Score = 50.8 bits (116), Expect = 1e-06 Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 4/47 (8%) Frame = +2 Query: 119 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHI 247 HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNI 97 Score = 31.1 bits (67), Expect = 0.97 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +3 Query: 510 DAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 635 +A + A I IGK+ KE L IGF VH D + K+ ++ Sbjct: 182 NAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223 >02_04_0430 + 22834405-22834839 Length = 144 Score = 29.1 bits (62), Expect = 3.9 Identities = 13/22 (59%), Positives = 16/22 (72%) Frame = -1 Query: 365 FSRLISHLPPILLASSSHIGRM 300 FSR+ S LPP L + SHIGR+ Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116 >09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708, 9153827-9153927,9154334-9154490 Length = 208 Score = 28.7 bits (61), Expect = 5.2 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 89 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 184 AEV PE ++ HP +Q + Y D N +W E Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33 >01_05_0104 + 18148396-18148642,18148797-18148886,18148972-18149072, 18149174-18149287,18149381-18149462,18149592-18149659, 18149747-18149806,18149885-18150009,18150663-18150861, 18150942-18151073,18151152-18151244,18151360-18152244, 18152339-18152664,18153003-18153341,18153911-18153996, 18154054-18154139 Length = 1010 Score = 28.3 bits (60), Expect = 6.9 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = +1 Query: 262 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 405 LR ++ + G R + E++ ++ +W + LE KQR L +R W D Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892 >02_02_0106 + 6814391-6817007,6817086-6817462 Length = 997 Score = 27.9 bits (59), Expect = 9.1 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%) Frame = -1 Query: 452 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 297 + SE K SP+ SN NLS + CF +L S I++ ++S G++P Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,016,379 Number of Sequences: 37544 Number of extensions: 370936 Number of successful extensions: 844 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 809 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 839 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1980691104 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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