Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00336
(746 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0446 - 8567436-8567567,8567649-8567768,8569837-8569914,857... 85 7e-17
10_08_0323 + 16743358-16743566,16744536-16744704,16744834-167449... 84 1e-16
01_07_0331 + 42804385-42804659,42806175-42806340,42806424-428065... 79 4e-15
02_04_0430 + 22834405-22834839 29 3.9
09_02_0423 + 9153088-9153181,9153281-9153378,9153532-9153708,915... 29 5.2
01_05_0104 + 18148396-18148642,18148797-18148886,18148972-181490... 28 6.9
02_02_0106 + 6814391-6817007,6817086-6817462 28 9.1
>03_02_0446 -
8567436-8567567,8567649-8567768,8569837-8569914,
8570018-8570122,8570214-8570306,8570464-8570619
Length = 227
Score = 84.6 bits (200), Expect = 7e-17
Identities = 35/76 (46%), Positives = 54/76 (71%)
Frame = +1
Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEIC 456
D +FK+GIRP+WED AN+ GG+W+I +K T RFW D+VL+L+G+ + SD++C
Sbjct: 105 DLHLFKEGIRPLWEDPANRSGGKWIIRFKK----TVSGRFWEDLVLVLVGDQLDYSDDVC 160
Query: 457 GAVVNVRPKVDKIAIW 504
G V++VR D +++W
Sbjct: 161 GVVLSVRFNEDILSVW 176
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 3/46 (6%)
Frame = +2
Query: 119 HPLQNQWSLWFYDND---RNKTWEENLIELTTFDTVEDFWRLYHHI 247
HPL+ ++ LW+ R++++E+N+ ++ F TVE FW Y H+
Sbjct: 49 HPLRRRFVLWYTRRTPGARSQSYEDNIKKIVDFSTVESFWVCYCHL 94
>10_08_0323 +
16743358-16743566,16744536-16744704,16744834-16744959,
16745813-16745878,16745997-16746047
Length = 206
Score = 83.8 bits (198), Expect = 1e-16
Identities = 35/84 (41%), Positives = 53/84 (63%)
Frame = +1
Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
S++ D+ +FK G+ P WED GG+W + +K T L+ WL+ ++ LIGE F
Sbjct: 79 SKVTVNADFHLFKAGVEPKWEDPECANGGKWTVPCSRK---TTLENMWLETLMALIGEQF 135
Query: 436 ENSDEICGAVVNVRPKVDKIAIWT 507
+ S+EICG V +VR + DK+A+WT
Sbjct: 136 DESEEICGVVASVRQRGDKLALWT 159
Score = 42.7 bits (96), Expect = 3e-04
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +2
Query: 119 HPLQNQWSLWFYDNDRNK---TWEENLIELTTFDTVEDFWRLYHHI 247
H L QW+ W+ + K W +L + TFDTVE+FW LY I
Sbjct: 30 HKLHRQWAFWYDIQSKPKPGAAWGTSLRKAYTFDTVEEFWGLYDQI 75
>01_07_0331 +
42804385-42804659,42806175-42806340,42806424-42806549,
42807142-42807207,42807645-42807698,42808843-42809019,
42809100-42809102
Length = 288
Score = 79.0 bits (186), Expect = 4e-15
Identities = 39/84 (46%), Positives = 50/84 (59%)
Frame = +1
Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
S+L G D+ FK I P WED GG+W S + + D WL +L +IGE F
Sbjct: 101 SKLVVGADFHCFKNKIEPKWEDPICANGGKWTFSCGRGKS----DTMWLHTLLAMIGEQF 156
Query: 436 ENSDEICGAVVNVRPKVDKIAIWT 507
+ DEICGAVV+VR K ++IAIWT
Sbjct: 157 DYGDEICGAVVSVRGKQERIAIWT 180
Score = 50.8 bits (116), Expect = 1e-06
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = +2
Query: 119 HPLQNQWSLWFYDNDRNK----TWEENLIELTTFDTVEDFWRLYHHI 247
HPL++ W+ WF DN + K TW ++ + TF TVEDFW LY++I
Sbjct: 52 HPLEHAWTFWF-DNPQGKSKQATWGSSIRPIHTFSTVEDFWSLYNNI 97
Score = 31.1 bits (67), Expect = 0.97
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +3
Query: 510 DAMKQHATIEIGKKLKEQLGIHGKIGFQVHRDTMVKHSSATK 635
+A + A I IGK+ KE L IGF VH D + K+ ++
Sbjct: 182 NAANEAAQISIGKQWKEFLDYKDSIGFIVHWDILSKYEDMSE 223
>02_04_0430 + 22834405-22834839
Length = 144
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/22 (59%), Positives = 16/22 (72%)
Frame = -1
Query: 365 FSRLISHLPPILLASSSHIGRM 300
FSR+ S LPP L + SHIGR+
Sbjct: 95 FSRVGSPLPPTLSSGGSHIGRI 116
>09_02_0423 +
9153088-9153181,9153281-9153378,9153532-9153708,
9153827-9153927,9154334-9154490
Length = 208
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 89 AEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEE 184
AEV PE ++ HP +Q + Y D N +W E
Sbjct: 2 AEVKPEDMVHHPPMDQLQGFEYCIDSNPSWGE 33
>01_05_0104 +
18148396-18148642,18148797-18148886,18148972-18149072,
18149174-18149287,18149381-18149462,18149592-18149659,
18149747-18149806,18149885-18150009,18150663-18150861,
18150942-18151073,18151152-18151244,18151360-18152244,
18152339-18152664,18153003-18153341,18153911-18153996,
18154054-18154139
Length = 1010
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +1
Query: 262 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDL-DRFWLD 405
LR ++ + G R + E++ ++ +W + LE KQR L +R W D
Sbjct: 845 LRNEREFLARRMGSR-LTEEERERLFIKWQVPLEAKQRKLQLVNRLWTD 892
>02_02_0106 + 6814391-6817007,6817086-6817462
Length = 997
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Frame = -1
Query: 452 ISSEFSKFSPIKRRTTSNQNLSKSVKR--CFFSRLISHLPPILLASSSHIGRMP 297
+ SE K SP+ SN NLS + CF +L S I++ ++S G++P
Sbjct: 354 LPSELGKHSPLANLEVSNNNLSGELPEGLCFNRKLYS----IVVFNNSFSGKLP 403
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,016,379
Number of Sequences: 37544
Number of extensions: 370936
Number of successful extensions: 844
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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