Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00336
         (746 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)                 101   6e-22
SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)                   32   0.43 
SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)            30   2.3  
SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)                29   3.0  
SB_6925| Best HMM Match : DED (HMM E-Value=0.0028)                     29   3.0  
SB_49459| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  

>SB_38642| Best HMM Match : IF4E (HMM E-Value=9.7e-12)
          Length = 263

 Score =  101 bits (242), Expect = 6e-22
 Identities = 46/71 (64%), Positives = 54/71 (76%), Gaps = 1/71 (1%)
 Frame = +1

Query: 298 GIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEICGAVVNV 474
           GI PMWED  NK GGRWLI+  K QR +DLDRFWL+ +L LIGE F E S+ +CGAVV +
Sbjct: 2   GIEPMWEDKRNKDGGRWLINTNKNQRQSDLDRFWLETLLCLIGEAFGEYSEGVCGAVVQI 61

Query: 475 RPKVDKIAIWT 507
           R K DKIA+WT
Sbjct: 62  RNKGDKIAVWT 72


>SB_916| Best HMM Match : GatB_Yqey (HMM E-Value=9.5)
          Length = 238

 Score = 32.3 bits (70), Expect = 0.43
 Identities = 12/42 (28%), Positives = 27/42 (64%)
 Frame = -3

Query: 384 ISKALFFLKTDKPSSSHLVSIVFPHRTNALLEYCIVMTLAKF 259
           IS+ LFFL+  + +   +VS++F +R++   ++C+   + +F
Sbjct: 88  ISQTLFFLQFTRVTGKGIVSLLFSNRSDLFSKHCLAANIKEF 129


>SB_34416| Best HMM Match : Peptidase_C1 (HMM E-Value=2e-09)
          Length = 817

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/46 (45%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 184 LLPCFVSVIVVKPETPLVL*RVLDQKFRGHLRV-TVGLRFSGSRPL 50
           LLPC V V+  +P T L L  +L Q    +  + TVG   SGSRPL
Sbjct: 617 LLPCRVHVVASRPSTLLGLSYLLSQDLTYYESLQTVGY-VSGSRPL 661


>SB_30764| Best HMM Match : Dynein_heavy (HMM E-Value=0)
          Length = 1091

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = -1

Query: 494 ILSTFGLTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLP 339
           +LSTF   L T     S+F+  + +  +   N ++ + ++R  F + + HLP
Sbjct: 690 LLSTFVNRLFTVSSFESDFALVTDVDGKKGKNISMPEGIRREQFVQWVEHLP 741


>SB_6925| Best HMM Match : DED (HMM E-Value=0.0028)
          Length = 229

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 343 RWLISLEKKQRFTDLDRFWLDVVLLLIGENFENSDEICGAVVNVR 477
           R + +L  K  F  + RF  D++   IG+ +ENS  +  A+  VR
Sbjct: 24  RSISTLLTKDNFKAMKRFLYDIISTKIGDRYENSLNLFEALSQVR 68


>SB_49459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 833

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 184 LLPCFVSVIVVKPETPLVL*RVLDQKFRGHLRV-TVGLRFSGSRPL 50
           LLPC V V+  +P T L L  +L Q       + TVG   SGSRPL
Sbjct: 372 LLPCRVHVVASRPSTLLGLSYLLSQDLTYFESLQTVGY-VSGSRPL 416


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,178,477
Number of Sequences: 59808
Number of extensions: 444736
Number of successful extensions: 1118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)