Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00336
         (746 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    25   2.5  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            24   4.3  
AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.        24   4.3  
AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.        24   4.3  
AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.        24   4.3  
AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.        24   4.3  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    24   4.3  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 25.0 bits (52), Expect = 2.5
 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +2

Query: 140 SLWFYDNDRNK--TWEENLIELTTFDTVEDFWRLYHHIKLRQNFAKVMTMQYSSKAFVLC 313
           SL FY  D      WE+  ++  T +       L   + + ++ A+ +  QYS+ + ++ 
Sbjct: 257 SLLFYKLDSKTLVAWEQYSVDFKTDEFTNLVEFLEQRVNILKSSAQNICNQYSANSIMVT 316

Query: 314 GKTMLTRWEEDGLSVLRKNN 373
           G+          L V + NN
Sbjct: 317 GRQARRDGRNVALPVQQTNN 336


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = +3

Query: 549  KLKEQLGIHGKIGFQVHRDTMVKHSSAT 632
            ++KE++G   +IG+ V R+ + +H+  T
Sbjct: 2912 QIKEKVGKMKQIGYHVSRNDVTQHAITT 2939


>AY334004-1|AAR01129.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 669 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 574
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AY334003-1|AAR01128.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 669 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 574
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AY334002-1|AAR01127.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 669 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 574
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AY334001-1|AAR01126.1|  194|Anopheles gambiae integrin protein.
          Length = 194

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 669 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 574
           IC   T  C DSWS +     C C      C+
Sbjct: 1   ICTCGTCSCFDSWSGDN----CECTTDTTGCK 28


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = -3

Query: 669 ICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCR 574
           IC   T  C DSWS +     C C      C+
Sbjct: 577 ICTCGTCSCFDSWSGDN----CECTTDTTGCK 604


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 749,683
Number of Sequences: 2352
Number of extensions: 14794
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 76923555
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)