Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00336
(746 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation fa... 104 8e-23
AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation fa... 100 9e-22
AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation fa... 99 2e-21
U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation fact... 86 2e-17
Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical pr... 83 2e-16
AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical... 79 3e-15
AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical... 79 3e-15
AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation i... 79 3e-15
U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation fact... 73 2e-13
AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation i... 73 2e-13
AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical ... 29 2.6
AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical... 29 4.6
Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical pr... 28 8.1
AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical... 28 8.1
>AF068714-2|AAC17807.1| 248|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform a protein.
Length = 248
Score = 104 bits (249), Expect = 8e-23
Identities = 44/83 (53%), Positives = 62/83 (74%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-E 438
L G DY +FK+GI+PMWED N GGRWL+ ++K++R LD +WL++++ ++GE F E
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQRRTQLLDHYWLELLMAIVGEQFDE 139
Query: 439 NSDEICGAVVNVRPKVDKIAIWT 507
D ICGAVVNVR K DK+++WT
Sbjct: 140 YGDYICGAVVNVRQKGDKVSLWT 162
Score = 85.8 bits (203), Expect = 3e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +2
Query: 83 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIK 250
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQ 75
>AF068714-3|AAM22022.1| 250|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform c protein.
Length = 250
Score = 100 bits (240), Expect = 9e-22
Identities = 46/85 (54%), Positives = 63/85 (74%), Gaps = 3/85 (3%)
Frame = +1
Query: 262 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK-QRFTD-LDRFWLDVVLLLIGENF 435
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE F
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQLQRRTQLLDHYWLELLMAIVGEQF 139
Query: 436 -ENSDEICGAVVNVRPKVDKIAIWT 507
E D ICGAVVNVR K DK+++WT
Sbjct: 140 DEYGDYICGAVVNVRQKGDKVSLWT 164
Score = 85.8 bits (203), Expect = 3e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +2
Query: 83 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIK 250
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQ 75
>AF068714-4|AAK68676.1| 251|Caenorhabditis elegans Initiation
factor 4e (eif4e) familyprotein 3, isoform b protein.
Length = 251
Score = 99 bits (238), Expect = 2e-21
Identities = 46/86 (53%), Positives = 63/86 (73%), Gaps = 4/86 (4%)
Frame = +1
Query: 262 LRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKK--QRFTD-LDRFWLDVVLLLIGEN 432
L G DY +FK+GI+PMWED N GGRWL+ ++K+ QR T LD +WL++++ ++GE
Sbjct: 80 LNWGSDYYLFKEGIKPMWEDVNNVQGGRWLVVVDKQKLQRRTQLLDHYWLELLMAIVGEQ 139
Query: 433 F-ENSDEICGAVVNVRPKVDKIAIWT 507
F E D ICGAVVNVR K DK+++WT
Sbjct: 140 FDEYGDYICGAVVNVRQKGDKVSLWT 165
Score = 85.8 bits (203), Expect = 3e-17
Identities = 34/56 (60%), Positives = 44/56 (78%)
Frame = +2
Query: 83 SNAEVPPEFLIKHPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIK 250
S+A VPPE L +HPLQN+W+LW+ DRNK WE+ L ++ FDTVEDFW LY+HI+
Sbjct: 20 SDASVPPELLTRHPLQNRWALWYLKADRNKEWEDCLKMVSLFDTVEDFWSLYNHIQ 75
>U41550-3|AAA83286.1| 228|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 2 protein.
Length = 228
Score = 86.2 bits (204), Expect = 2e-17
Identities = 38/85 (44%), Positives = 55/85 (64%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
S L DY VF+ GI PMWE N+ GGRWLI++EK + +D W ++++ +IGE F
Sbjct: 63 SGLNPPSDYNVFRDGIEPMWEVPQNQNGGRWLITIEKGRTPEIMDTIWTEILMAMIGEQF 122
Query: 436 -ENSDEICGAVVNVRPKVDKIAIWT 507
++ + +CG V NVR K KI++WT
Sbjct: 123 SDDIESLCGIVCNVRGKGSKISVWT 147
Score = 52.4 bits (120), Expect = 3e-07
Identities = 21/49 (42%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Frame = +2
Query: 113 IKHP---LQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIK 250
I HP L+ W+ W+ +++RNK+WEE L + TF +V +FW L+ IK
Sbjct: 12 ISHPVYKLKRNWTWWYLNDERNKSWEERLKNVKTFSSVGEFWALHDSIK 60
>Z81546-5|CAB04454.2| 212|Caenorhabditis elegans Hypothetical
protein F53A2.6 protein.
Length = 212
Score = 83.0 bits (196), Expect = 2e-16
Identities = 36/78 (46%), Positives = 52/78 (66%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEI 453
DY VF+ I+PMWE N GGRWLI ++K + +D WL++++ L+GE F ++ + I
Sbjct: 65 DYNVFRDDIQPMWEVPENSNGGRWLIVIDKGKTPEMVDAIWLEILMALVGEQFGKDMESI 124
Query: 454 CGAVVNVRPKVDKIAIWT 507
CG V NVR K KI++WT
Sbjct: 125 CGLVCNVRGKGSKISVWT 142
Score = 56.4 bits (130), Expect = 2e-08
Identities = 19/44 (43%), Positives = 33/44 (75%)
Frame = +2
Query: 119 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHIK 250
+PL+ W+ W+ +++RNK+WE+ L ++ TF+TV +FW LY I+
Sbjct: 12 YPLKRNWTWWYLNDERNKSWEDRLKKVYTFNTVSEFWALYDAIR 55
>AL117195-24|CAB55035.1| 201|Caenorhabditis elegans Hypothetical
protein Y57A10A.30b protein.
Length = 201
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEI 453
DY VF+ I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + I
Sbjct: 62 DYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESI 121
Query: 454 CGAVVNVRPKVDKIAIWT 507
CG V NVR + KI++WT
Sbjct: 122 CGLVCNVRGQGSKISVWT 139
Score = 56.0 bits (129), Expect = 3e-08
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +2
Query: 119 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHI 247
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAI 51
>AL117195-23|CAB60769.1| 240|Caenorhabditis elegans Hypothetical
protein Y57A10A.30a protein.
Length = 240
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEI 453
DY VF+ I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + I
Sbjct: 101 DYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESI 160
Query: 454 CGAVVNVRPKVDKIAIWT 507
CG V NVR + KI++WT
Sbjct: 161 CGLVCNVRGQGSKISVWT 178
Score = 56.0 bits (129), Expect = 3e-08
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +2
Query: 119 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHI 247
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I
Sbjct: 48 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAI 90
>AF214652-1|AAF62415.1| 201|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 5 protein.
Length = 201
Score = 79.0 bits (186), Expect = 3e-15
Identities = 37/78 (47%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = +1
Query: 277 DYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF-ENSDEI 453
DY VF+ I+P WE N GGRWLI + K + LD WL+++L LIGE F ++ + I
Sbjct: 62 DYNVFRDDIQPKWEAPENWDGGRWLIIINKGKTPEVLDAVWLEILLALIGEQFGKDMESI 121
Query: 454 CGAVVNVRPKVDKIAIWT 507
CG V NVR + KI++WT
Sbjct: 122 CGLVCNVRGQGSKISVWT 139
Score = 56.0 bits (129), Expect = 3e-08
Identities = 20/43 (46%), Positives = 30/43 (69%)
Frame = +2
Query: 119 HPLQNQWSLWFYDNDRNKTWEENLIELTTFDTVEDFWRLYHHI 247
+PLQ WS WF ++DRN +W++ L ++ TF+TV +FW Y I
Sbjct: 9 YPLQRNWSWWFLNDDRNASWQDRLKKVYTFNTVPEFWAFYEAI 51
>U64605-1|AAF98601.1| 212|Caenorhabditis elegans Initiation factor
4e (eif4e) familyprotein 4 protein.
Length = 212
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = +1
Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
+E+ D FK G++P+WED AN GG+W+I L+K R W ++++ +IGE F
Sbjct: 81 TEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----TRIWENLLMAIIGEQF 136
Query: 436 ENSDEICGAVVNVRPKVDKIAIW 504
DE+CGAV ++R + D I++W
Sbjct: 137 LVGDELCGAVCSIRNQEDIISLW 159
>AF214651-1|AAF62414.1| 212|Caenorhabditis elegans translation
initiation factor eIF4Eisoform 4 protein.
Length = 212
Score = 73.3 bits (172), Expect = 2e-13
Identities = 33/83 (39%), Positives = 52/83 (62%)
Frame = +1
Query: 256 SELRQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVVLLLIGENF 435
+E+ D FK G++P+WED AN GG+W+I L+K R W ++++ +IGE F
Sbjct: 81 TEMCDKADIHFFKTGVKPVWEDPANCKGGKWIIRLKKGLS----TRIWENLLMAIIGEQF 136
Query: 436 ENSDEICGAVVNVRPKVDKIAIW 504
DE+CGAV ++R + D I++W
Sbjct: 137 LVGDELCGAVCSIRNQEDIISLW 159
>AL132876-5|CAC48119.1| 576|Caenorhabditis elegans Hypothetical
protein Y105E8A.5 protein.
Length = 576
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 672 KICNAKTKQCIDSWSQNYA*PLCLCVLGNQSCRVSLAVLSVFS 544
KI N+ T CI +++ A PL + V+G + C + L F+
Sbjct: 180 KIANSATITCIAKLTKSTAEPLDILVIGTEHCEIFLIDSQAFT 222
>AF045642-12|AAD34648.1| 348|Caenorhabditis elegans Hypothetical
protein C17H12.8 protein.
Length = 348
Score = 28.7 bits (61), Expect = 4.6
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = -1
Query: 476 LTLTTAPQISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSHIG 306
LT T S++F F TT Q ++KSV R++ H +L + +H+G
Sbjct: 84 LTRTIVSSRSAKFVHFYIFPNTTTKFQVITKSVNMHSSFRIVVHFERMLNTTVTHLG 140
>Z71267-5|CAJ80828.1| 266|Caenorhabditis elegans Hypothetical
protein W01A8.7 protein.
Length = 266
Score = 27.9 bits (59), Expect = 8.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +1
Query: 265 RQGHDYAVFKQGIRPMWEDDANKMGGRWLISLEKKQRFTDLDRFWLDVV 411
+ GH Y K+ + WE + N G+W+ K++ +D+FW++V+
Sbjct: 227 KAGH-YQHLKKILYKKWESENN---GKWI-----KRKSNQVDKFWIEVI 266
>AL110478-11|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
protein Y26D4A.9 protein.
Length = 1435
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/48 (25%), Positives = 21/48 (43%)
Frame = -1
Query: 455 QISSEFSKFSPIKRRTTSNQNLSKSVKRCFFSRLISHLPPILLASSSH 312
++ E K +KR + K C F + +S +L++SS H
Sbjct: 1345 RLEVEVKKNKGVKRSVVKKELTFADYKNCLFDKTVSRKQQMLISSSKH 1392
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,564,098
Number of Sequences: 27780
Number of extensions: 337868
Number of successful extensions: 874
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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