Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00335
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 122 8e-29
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 113 2e-26
SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr 1||... 95 7e-21
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 79 9e-16
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||... 71 2e-13
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||... 70 3e-13
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 70 3e-13
SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr 1|||... 69 1e-12
SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch... 67 2e-12
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch... 55 1e-08
SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces pom... 55 1e-08
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 54 2e-08
SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|ch... 54 2e-08
SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces pomb... 53 5e-08
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 51 2e-07
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po... 50 3e-07
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p... 48 1e-06
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 42 1e-04
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 42 1e-04
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p... 41 2e-04
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 40 4e-04
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac... 29 0.97
SPBC119.15 |||AAA family ATPase, unknown biological role|Schizos... 28 1.3
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 28 1.3
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 27 3.0
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 27 3.9
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 26 5.2
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 26 5.2
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 6.9
SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces p... 26 6.9
SPAC4D7.09 |tif223||translation initiation factor eIF2B|Schizosa... 26 6.9
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo... 26 6.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.1
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 25 9.1
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 122 bits (293), Expect = 8e-29
Identities = 56/70 (80%), Positives = 64/70 (91%)
Frame = +2
Query: 44 KTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIW 223
K+YD L KLLLIGDSGVGK+ +L RFSED+F SFI+TIGIDFKIRTI+LDGK++KLQIW
Sbjct: 4 KSYDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIW 63
Query: 224 DTAGQERFRT 253
DTAGQERFRT
Sbjct: 64 DTAGQERFRT 73
Score = 117 bits (281), Expect = 2e-27
Identities = 50/89 (56%), Positives = 73/89 (82%)
Frame = +1
Query: 256 TTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSK 435
TTAYYRG+MGI+L+YDVT++KSF+N++ W N+E++AS +V K+++GNKCD + QRQVS
Sbjct: 75 TTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSF 134
Query: 436 ERGEQLAIEYQIKFVETSAKDSLNVNMHF 522
E+G+ LA E +KF+E SAK ++NV+ F
Sbjct: 135 EQGQALADELGVKFLEASAKTNVNVDEAF 163
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = +3
Query: 489 SKRLVKCEYAFYTLARDI-KAKMEKKQEASN 578
+K V + AF+TLAR+I K K++ + E SN
Sbjct: 153 AKTNVNVDEAFFTLAREIKKQKIDAENEFSN 183
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 113 bits (273), Expect = 2e-26
Identities = 52/72 (72%), Positives = 61/72 (84%)
Frame = +2
Query: 38 MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQ 217
M YD LFKLLLIGDSGVGK+ +L RF++D + S+ISTIG+DFKIRT +L+GK VKLQ
Sbjct: 1 MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQ 60
Query: 218 IWDTAGQERFRT 253
IWDTAGQERFRT
Sbjct: 61 IWDTAGQERFRT 72
Score = 86.6 bits (205), Expect = 3e-18
Identities = 38/89 (42%), Positives = 59/89 (66%)
Frame = +1
Query: 256 TTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSK 435
T++YYRG+ GI++VYDVT++ SF N+K W++ I+ A V ++++GNK D+ ++ V
Sbjct: 74 TSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEY 133
Query: 436 ERGEQLAIEYQIKFVETSAKDSLNVNMHF 522
++ A I F+ETSAKDS NV F
Sbjct: 134 SVAKEFADSLNIPFLETSAKDSTNVEQAF 162
>SPAC18G6.03 |ypt3||GTPase Ypt3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 214
Score = 95.5 bits (227), Expect = 7e-21
Identities = 43/67 (64%), Positives = 53/67 (79%)
Frame = +2
Query: 50 YDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDT 229
YD LFK +LIGDSGVGK+++L RF+ + FNI STIG++F R I LD KK+K QIWDT
Sbjct: 7 YDYLFKTVLIGDSGVGKSNLLMRFTRNEFNIESKSTIGVEFATRNIVLDNKKIKAQIWDT 66
Query: 230 AGQERFR 250
AGQER+R
Sbjct: 67 AGQERYR 73
Score = 90.2 bits (214), Expect = 3e-19
Identities = 38/89 (42%), Positives = 60/89 (67%)
Frame = +1
Query: 256 TTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSK 435
T+AYYRG++G ++VYD+T + SF+N+ W++ + E+A +++ M++GNK DL R VS
Sbjct: 76 TSAYYRGAVGALIVYDITKQSSFDNVGRWLKELREHADSNIVIMLVGNKTDLLHLRAVST 135
Query: 436 ERGEQLAIEYQIKFVETSAKDSLNVNMHF 522
E + A E + F+ETSA D+ NV F
Sbjct: 136 EEAQAFAAENNLSFIETSAMDASNVEEAF 164
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 78.6 bits (185), Expect = 9e-16
Identities = 34/64 (53%), Positives = 50/64 (78%)
Frame = +2
Query: 62 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 241
FKL+ +G+ VGKTS++ RF D F+ ++ +TIGIDF +T+ L+ + V+LQ+WDTAGQE
Sbjct: 12 FKLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE 71
Query: 242 RFRT 253
RFR+
Sbjct: 72 RFRS 75
Score = 76.2 bits (179), Expect = 5e-15
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +1
Query: 262 AYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKER 441
+Y R S ++VYD+TN SF N + WI ++ DV +++GNK DL +RQV++E
Sbjct: 79 SYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRAERGDDVIIVLVGNKTDLADKRQVTQEE 138
Query: 442 GEQLAIEYQIKFVETSAKDSLNVNMHF 522
GE+ A E +I +ETSAK NV + F
Sbjct: 139 GEKKAKELKIMHMETSAKAGHNVKLLF 165
>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 205
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/65 (47%), Positives = 48/65 (73%)
Frame = +2
Query: 59 LFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQ 238
L K++++G+SGVGKTSI+ ++ F+ + +TIG DF + + +D K V LQ+WDTAGQ
Sbjct: 8 LLKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQ 67
Query: 239 ERFRT 253
ERF++
Sbjct: 68 ERFQS 72
Score = 58.0 bits (134), Expect = 1e-09
Identities = 36/93 (38%), Positives = 52/93 (55%), Gaps = 6/93 (6%)
Frame = +1
Query: 262 AYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEK----MILGNKCDLDSQ-RQ 426
A+YRG+ +LVYDV N KSFE + +W AS + ++LGNK D++ Q R
Sbjct: 76 AFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRM 135
Query: 427 VSKERGEQLA-IEYQIKFVETSAKDSLNVNMHF 522
VSK + +I + ETSAK+++NV F
Sbjct: 136 VSKSKALAFCQARGEIPYFETSAKEAINVQEAF 168
>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 234
Score = 70.1 bits (164), Expect = 3e-13
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Frame = +1
Query: 265 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERG 444
YYRG+ G +LVYDVTN+ SFE + +W+ +I A + + ++ G+K DL +QRQVS E
Sbjct: 82 YYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEA 141
Query: 445 EQLAIEYQIKFV-ETSAKDSLNVNMHF 522
+ E I ETS+ NV F
Sbjct: 142 AEFCSEKHISSAHETSSYTGSNVEECF 168
Score = 69.3 bits (162), Expect = 6e-13
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 4/74 (5%)
Frame = +2
Query: 44 KTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDL----DGKKVK 211
++YD L K++L G SG GK+ +L RF ++ ++ T+GIDF R I + K++K
Sbjct: 4 ESYDYLVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIK 63
Query: 212 LQIWDTAGQERFRT 253
LQIWDTAGQE+FR+
Sbjct: 64 LQIWDTAGQEKFRS 77
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 70.1 bits (164), Expect = 3e-13
Identities = 30/63 (47%), Positives = 46/63 (73%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
K++++GDSGVGKT ++ +F F+ + +TIG DF + + +D K V LQ+WDTAGQER
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 245 FRT 253
F++
Sbjct: 70 FQS 72
Score = 47.2 bits (107), Expect = 3e-06
Identities = 31/90 (34%), Positives = 51/90 (56%), Gaps = 7/90 (7%)
Frame = +1
Query: 262 AYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD---VEKMILGNKCDLD-SQRQV 429
A+YRG+ ++VY+V N KSF++++NW + S D +I+GN+ D D S+R V
Sbjct: 76 AFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDKDASKRAV 135
Query: 430 SKERG-EQLAIEYQIKFV--ETSAKDSLNV 510
S R + ++ + E SAK++ NV
Sbjct: 136 SLHRALDYCKSKHGSNMIHFEASAKENTNV 165
>SPAC6F6.15 |ypt5||GTPase Ypt5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 68.5 bits (160), Expect = 1e-12
Identities = 33/64 (51%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLD-GKKVKLQIWDTAGQE 241
KL+L+GDS VGK+S++ RF +D F+ STIG F +T+ +D VKL+IWDTAGQE
Sbjct: 16 KLVLLGDSAVGKSSLVLRFVKDQFDDYRESTIGAAFLTQTLPIDENTSVKLEIWDTAGQE 75
Query: 242 RFRT 253
R+++
Sbjct: 76 RYKS 79
Score = 68.1 bits (159), Expect = 1e-12
Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Frame = +1
Query: 250 YKTTA--YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQR 423
YK+ A YYR + ++VYD+T S E K+WI+ ++ A + + GNK DL +R
Sbjct: 77 YKSLAPMYYRNANCAIVVYDITQAASLEKAKSWIKELQRQAPEGIVIALAGNKLDLAQER 136
Query: 424 Q-VSKERGEQLAIEYQIKFVETSAKDSLNVNMHFT 525
+ V K E A E + F ETSAK + NVN FT
Sbjct: 137 RAVEKADAEAYAAEANLLFFETSAKTAENVNELFT 171
>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 67.3 bits (157), Expect = 2e-12
Identities = 36/87 (41%), Positives = 50/87 (57%), Gaps = 1/87 (1%)
Frame = +1
Query: 265 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMIL-GNKCDLDSQRQVSKER 441
Y R G +LVY++T+ SF+ I + + I D ++L NKCDL+++R VS+
Sbjct: 76 YMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAE 135
Query: 442 GEQLAIEYQIKFVETSAKDSLNVNMHF 522
GEQLA +VETSAK LNV F
Sbjct: 136 GEQLAKSMHCLYVETSAKLRLNVEEAF 162
Score = 47.6 bits (108), Expect = 2e-06
Identities = 23/75 (30%), Positives = 43/75 (57%)
Frame = +2
Query: 38 MAKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQ 217
M TY +KL+++GD GVGK+++ + + F + TI ++ + ++DG+ L
Sbjct: 1 MRSTYLREYKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLD 59
Query: 218 IWDTAGQERFRTKQQ 262
+ DTAGQE + ++
Sbjct: 60 VLDTAGQEEYSAMRE 74
>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 185
Score = 55.2 bits (127), Expect = 1e-08
Identities = 32/86 (37%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
Frame = +1
Query: 274 GSMGIMLVYDVTNEKSFENIKNWIRNIEENASAD-VEKMILGNKCDLDSQRQVSKERGEQ 450
G G +LVY +T++ SFE +K I + + V +++GNK DL QR V+ E G+
Sbjct: 77 GIHGYVLVYSITSKSSFEMVKIVRDKILNHTGTEWVPIVVVGNKSDLHMQRAVTAEEGKA 136
Query: 451 LAIEYQIKFVETSAKDSLNVNMHFTL 528
LA E++ + E SA+ + NV F L
Sbjct: 137 LANEWKCAWTEASARHNENVARAFEL 162
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/61 (31%), Positives = 35/61 (57%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
++ ++G VGK+S+ ++ E+ F S+ TI F + I G++ +I DTAGQ+
Sbjct: 8 RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFS-KNIKYKGQEFATEIIDTAGQDE 66
Query: 245 F 247
+
Sbjct: 67 Y 67
>SPAC1F7.04 |rho1||Rho family GTPase Rho1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 54.8 bits (126), Expect = 1e-08
Identities = 23/61 (37%), Positives = 41/61 (67%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
KL+++GD GKT +L FS+ F ++ T+ ++ + +++DG+ V+L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHVELALWDTAGQED 66
Query: 245 F 247
+
Sbjct: 67 Y 67
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 54.4 bits (125), Expect = 2e-08
Identities = 22/61 (36%), Positives = 41/61 (67%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
KL+++GD GKT +L FS+ F ++ T+ ++ + +++DG+ ++L +WDTAGQE
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENY-VADVEVDGRHIELALWDTAGQED 66
Query: 245 F 247
+
Sbjct: 67 Y 67
>SPAC1565.06c |spg1|sid3|GTPase Spg1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 198
Score = 54.0 bits (124), Expect = 2e-08
Identities = 22/69 (31%), Positives = 40/69 (57%)
Frame = +2
Query: 41 AKTYDCLFKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQI 220
A+ + K+ +IGDS +GKTS++ + + +F+ T+G++F +TI + ++ I
Sbjct: 4 ARKNNVTIKVGMIGDSSIGKTSLMVTYVQGSFDEESTQTLGVNFMEKTISIRNTEITFSI 63
Query: 221 WDTAGQERF 247
WD GQ F
Sbjct: 64 WDLGGQREF 72
>SPAC16.01 |rho2||Rho family GTPase Rho2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 52.8 bits (121), Expect = 5e-08
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
KL+++GD GKTS+L F+ F ++ T+ ++ + +DGK V+L +WDTAGQE
Sbjct: 10 KLVVVGDGACGKTSLLSVFTLGYFPTEYVPTVFENY-VSDCRVDGKSVQLALWDTAGQEE 68
Query: 245 F 247
+
Sbjct: 69 Y 69
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/61 (36%), Positives = 36/61 (59%)
Frame = +2
Query: 62 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 241
FKL+L+GD G GKT+ + R F +I+T+G++ + ++ +WDTAGQE
Sbjct: 10 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQE 69
Query: 242 R 244
+
Sbjct: 70 K 70
Score = 37.5 bits (83), Expect = 0.002
Identities = 22/86 (25%), Positives = 48/86 (55%)
Frame = +1
Query: 265 YYRGSMGIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQRQVSKERG 444
Y +G GI++ +DVT+ +++N+ +W R++ ++ ++ GNK D+ +R+V K +
Sbjct: 79 YIQGQCGIIM-FDVTSRITYKNVPHWWRDL-VRVCENIPIVLCGNKVDV-KERKV-KAKA 134
Query: 445 EQLAIEYQIKFVETSAKDSLNVNMHF 522
+ +++ + SAK + N F
Sbjct: 135 ITFHRKKNLQYYDISAKSNYNFEKPF 160
>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 205
Score = 50.4 bits (115), Expect = 3e-07
Identities = 24/61 (39%), Positives = 39/61 (63%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
K++++GD GKTS+L F++ F + TI ++ I I +DG ++L +WDTAGQE
Sbjct: 15 KIVILGDGAAGKTSLLNVFTKGYFPQVYEPTIFENY-IHDIFVDGNSIELSLWDTAGQEE 73
Query: 245 F 247
+
Sbjct: 74 Y 74
>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIR-TIDLDGKKVKLQIWDTAGQE 241
KL+++GD G GKT +L FS F ++ T+ ++ T + K ++L +WDTAGQE
Sbjct: 16 KLVVVGDGGCGKTCLLIVFSSGTFPERYVPTVFENYITDITYGPNSKVIELALWDTAGQE 75
Query: 242 RF 247
+
Sbjct: 76 EY 77
Score = 25.4 bits (53), Expect = 9.1
Identities = 23/100 (23%), Positives = 42/100 (42%), Gaps = 13/100 (13%)
Frame = +1
Query: 268 YRGSMGIMLVYDVTNEKSFENI-KNWIRNIEENASADVEKMILGNKCDLDSQRQ------ 426
Y S I+L + + S N+ + W ++ +++G K DL R
Sbjct: 85 YPNSNVILLCFSIDCPASLNNVTEKWYPEVQHFCPR-TPIVLVGLKADLRKDRNATEVLR 143
Query: 427 ------VSKERGEQLAIEYQIKFVETSAKDSLNVNMHFTL 528
V+ ++ + +A+ +VE SAK++ VN F L
Sbjct: 144 TQGLTPVTYQQAQSVALSMNAPYVECSAKENTGVNEVFQL 183
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/67 (28%), Positives = 36/67 (53%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
++L++G GKT+IL++ N S ++ + F + T+ K +K +WD GQ++
Sbjct: 23 RILMLGLDAAGKTTILYKLK---LNQSVVTIPTVGFNVETVTY--KNIKFNVWDVGGQDK 77
Query: 245 FRTKQQH 265
R +H
Sbjct: 78 IRPLWRH 84
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 41.5 bits (93), Expect = 1e-04
Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Frame = +2
Query: 29 VVKMAKTYDCLFKLLLIGDSGVGKTSIL-FRFSEDAFNISFISTIGIDFKIRTIDLDGKK 205
+++ K + ++LL+G GKT+IL +ED +S T G F+IRT++++G
Sbjct: 6 ILRQQKLKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVS--PTFG--FQIRTLEVEG-- 59
Query: 206 VKLQIWDTAGQERFRT--KQ--QHTTVVLWELCLSTMLRMRRALKTLR 337
++ IWD GQ+ R K + T ++W + LR+ TL+
Sbjct: 60 LRFTIWDIGGQKTLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQ 107
>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/61 (29%), Positives = 37/61 (60%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
K +++GD VGKT +L ++ + F ++ T+ ++ + T+ + + L ++DTAGQE
Sbjct: 5 KCVVVGDGAVGKTCLLISYTTNKFPSDYVPTVFDNYAV-TVMIGDEPYTLGLFDTAGQED 63
Query: 245 F 247
+
Sbjct: 64 Y 64
Score = 31.5 bits (68), Expect = 0.14
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 14/82 (17%)
Frame = +1
Query: 289 MLVYDVTNEKSFENIK-NWIRNIEENASADVEKMILGNKCDL------------DSQRQV 429
++ + VT+ SFEN+K W + + V +I+G + DL Q +
Sbjct: 79 LVCFSVTSPASFENVKEKWFPEVHHHCPG-VPCLIVGTQIDLRDDPSVQQKLARQHQHPL 137
Query: 430 SKERGEQLAIEY-QIKFVETSA 492
+ E+GE+LA E +K+VE SA
Sbjct: 138 THEQGERLARELGAVKYVECSA 159
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 39.9 bits (89), Expect = 4e-04
Identities = 19/67 (28%), Positives = 37/67 (55%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQER 244
++L++G GKT+IL++ ++ I TIG F + T++ + + +WD GQ++
Sbjct: 19 RILMVGLDAAGKTTILYKLKLGEI-VTTIPTIG--FNVETVEY--RNISFTVWDVGGQDK 73
Query: 245 FRTKQQH 265
R +H
Sbjct: 74 IRPLWRH 80
>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
Alg6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.97
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 77 IGDSGVGKTSILFRFSEDAFNISFISTIGIDFKI 178
IGD V ++LFRF + +F + I +GID I
Sbjct: 423 IGDMVVFSKNVLFRFIQLSFYVGMIVILGIDLFI 456
>SPBC119.15 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +1
Query: 232 WSREIPYKTTAYYRGSMGIMLVYDVTNEKSFENIKNWIRNIEE 360
W + Y + Y+ + +++VY+ + + E K W+ + EE
Sbjct: 155 WMSSMLYACSMLYKAKLPLIIVYNKCDVQDSEFAKKWMTDFEE 197
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 28.3 bits (60), Expect = 1.3
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 65 KLLLIGDSGVGKTSIL-FRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 241
K+LL+G SG GK+S+ FS + ID + + G V L +WD GQE
Sbjct: 4 KVLLMGRSGSGKSSMRSIVFSNYVAKDTRRLGATIDIEHSHVRFLGNLV-LNLWDCGGQE 62
Query: 242 RF 247
F
Sbjct: 63 AF 64
>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1317
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +1
Query: 283 GIMLVYDVTNEKSFENIKNWIRNIEENASADVEKMILG 396
GI L+ + E ++ +++ I+ENA + V +++LG
Sbjct: 947 GINLITSLIKEYGKNSVLRYMKAIQENAESAVRQLLLG 984
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 26.6 bits (56), Expect = 3.9
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = -3
Query: 377 TSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPR*YAVVLYGISLDQQY 225
+SALAF SM++I + ++FV + I P + VLY + D Q+
Sbjct: 401 SSALAFLSMYVIVDMAVLLCYAFVRTIQIIRKTGPYSHPDVLYNLYSDTQH 451
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -1
Query: 538 SLAKV*NAY-SHLTSLLLMSPQILSDILWLIVHLAPLIPVFENL 410
SL K+ AY +HL LLL + + LIVHL L+ ++ +
Sbjct: 572 SLQKIPEAYRTHLFFLLLDTKPVYKASSTLIVHLRTLVIIYNRV 615
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 26.2 bits (55), Expect = 5.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 546 AKMEKKQEASNPSGGRSGVHKPT 614
A + +ASNP+G S H+PT
Sbjct: 546 ASLAHLSQASNPNGSSSAPHRPT 568
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 6.9
Identities = 19/61 (31%), Positives = 34/61 (55%)
Frame = +2
Query: 62 FKLLLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQE 241
F L+L G+SG+GKT+ F F+ + S +G + K+R + K V+++I +E
Sbjct: 29 FTLMLCGESGLGKTT----FCNTLFSTTIKSHMGPE-KVRAKHAE-KTVEIEITKAELEE 82
Query: 242 R 244
+
Sbjct: 83 K 83
>SPBC83.07 |jmj3||Lid2 complex subunit Jmj3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 752
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 129 SSENLNSIDVFPTPESPIRSNLNKQS 52
SSE +S+DV PTP + NL S
Sbjct: 617 SSEPTSSVDVAPTPVEDVNVNLESIS 642
>SPAC4D7.09 |tif223||translation initiation factor
eIF2B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 474 ICGDISKRLVKCEY-AFYTLARDIKAKMEKKQEASNPSGGRS 596
I GD+ LVKC+Y +T+ +I+ + N GG S
Sbjct: 272 IRGDLIPYLVKCQYQKSFTVRENIQRFLSSPNNIDNYDGGLS 313
>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1513
Score = 25.8 bits (54), Expect = 6.9
Identities = 18/56 (32%), Positives = 24/56 (42%)
Frame = -3
Query: 383 FSTSALAFSSMFLIQFLMFSKLFSFVTS*TSIIPIEPR*YAVVLYGISLDQQYPIF 216
F+ L +LIQF +SF T+ T+ +E V GI D Y IF
Sbjct: 861 FTIPELGIIQKYLIQFEWLDMFYSFETTRTTDSDLERLITYGVSAGIPEDNDYMIF 916
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.1
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +2
Query: 71 LLIGDSGVGKTSILFRFSEDAFNISFISTIGIDFKIRTIDLDGKKVKLQIWDTAGQERFR 250
+L+GD+ GKT IL + A + I + ++ T+DL G+ ++ I A +
Sbjct: 1873 ILVGDTATGKTCILRLLA--AIAGAKIKEMAVNSDTDTMDLIGEYEQIDISRKASELFTD 1930
Query: 251 TKQQHTTVVL 280
QQ +V+
Sbjct: 1931 LSQQLLNIVI 1940
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 9.1
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Frame = +1
Query: 310 NEKSFENIKNWIRNIEENASADVEKMILGNKCDLDSQR-QVSKERGEQLAIEYQIKFVET 486
N +S + N I E+ VEK + GN+ L S+ +V K+ + E +
Sbjct: 58 NLESLRKLTNAQNTIIEDKKRKVEKPVSGNQFSLLSEEDEVDKKEKRRRRFENGSRSQNN 117
Query: 487 SAKDSLNVN 513
+ + L VN
Sbjct: 118 AKSEELKVN 126
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,265,092
Number of Sequences: 5004
Number of extensions: 69096
Number of successful extensions: 284
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 272
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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