Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00334
         (686 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.8  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.1  
EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2 pr...    21   9.5  
EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1 pr...    21   9.5  
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   9.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   9.5  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +3

Query: 66  IIELLCLFTIFKLHLFVDC-FVIINYY 143
           I    C F IF +HL   C F+  N +
Sbjct: 166 IYHFFCAFIIFTMHLLFCCAFIFFNMH 192



 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = +3

Query: 51  IITSKIIELLCLFTIFKLHLFVDCFVIINYYFATVSNFLFYF 176
           + T  ++ L+C++  + +HL   C  II          ++YF
Sbjct: 247 LFTVHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYF 288


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 487 GHYGRYDAKGGNIVDYHSCDFFPE 558
           G  G+Y A+ G +  Y  CDF  E
Sbjct: 785 GTPGKYTAEAGFMSFYEICDFLHE 808


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 99  KLHLFVDCFVIINY 140
           K+HLFV C  ++ Y
Sbjct: 777 KIHLFVKCVFLMGY 790


>EF125546-1|ABL73930.1|  237|Tribolium castaneum obstractor C2
           protein.
          Length = 237

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 517 GNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLA 621
           G   D   CD F   W       +C+    YDR A
Sbjct: 100 GIFADESKCDVFWNCWNGEASRYQCSPGLAYDREA 134


>EF125545-1|ABL73929.1|  274|Tribolium castaneum obstractor C1
           protein.
          Length = 274

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 11/35 (31%), Positives = 13/35 (37%)
 Frame = +1

Query: 517 GNIVDYHSCDFFPERWFDGVFVIRCNNTTLYDRLA 621
           G   D   CD F   W       +C+    YDR A
Sbjct: 100 GIFADESKCDVFWNCWNGEASRYQCSPGLAYDREA 134


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 295 IHFYLIFSKARRKVPQ 248
           +H+Y +  K+R+K P+
Sbjct: 2   VHYYRLSLKSRQKAPK 17


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 295 IHFYLIFSKARRKVPQ 248
           +H+Y +  K+R+K P+
Sbjct: 2   VHYYRLSLKSRQKAPK 17


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,354
Number of Sequences: 336
Number of extensions: 4027
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18010165
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)